Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 Y_RNA.665-201ENST00000516177 98 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 RPL7P20-201ENST00000520308 745 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 AL353743.1-202ENST00000431724 1695 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 Y_RNA.86-201ENST00000363020 111 ntBASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 RNA5SP139-201ENST00000364340 117 ntBASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 Z98749.2-208ENST00000381646 500 ntBASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 CD24P4-201ENST00000382840 243 ntBASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 U3.19-201ENST00000390893 196 ntBASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 RNA5SP354-201ENST00000391247 136 ntBASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 EIF4E2P1-201ENST00000393781 255 ntBASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 CYCSP4-201ENST00000429682 331 ntBASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 AC083863.1-201ENST00000438811 231 ntBASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 FCF1P3-201ENST00000496394 590 ntBASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 AC116353.2-201ENST00000505332 712 ntBASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 SNORA19.2-201ENST00000516013 114 ntBASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 SNORA14.1-201ENST00000516113 141 ntBASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 EIF4BP1-201ENST00000554881 351 ntBASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 AC021739.1-201ENST00000559631 174 ntBASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 YPEL5P2-201ENST00000605553 359 ntBASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 MAPK10-322ENST00000641485 4530 ntBASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 AL079305.1-201ENST00000623159 3008 ntBASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 ZNF962P-201ENST00000443465 3140 ntBASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC9Q9Y3X0 AC121333.1-201ENST00000567488 2709 ntBASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 RNU6-1027P-201ENST00000383998 107 ntBASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 MIR199A2-201ENST00000385289 110 ntBASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 FGF7P8-201ENST00000402994 292 ntBASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 AL138878.1-201ENST00000405131 347 ntBASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 AL162578.1-201ENST00000406202 378 ntBASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 AL356776.1-201ENST00000406574 447 ntBASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 AC083904.1-201ENST00000487828 231 ntBASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 LARP7P3-201ENST00000579888 337 ntBASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 AC093913.1-201ENST00000614178 329 ntBASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 AC090617.10-201ENST00000624308 134 ntBASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 AC099654.14-201ENST00000638599 341 ntBASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC9Q9Y3X0 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.96□□□□□ -1.61
CCDC9Q9Y3X0 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC4.96□□□□□ -1.61
CCDC9Q9Y3X0 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC9Q9Y3X0 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC9Q9Y3X0 RNU2-49P-201ENST00000410666 184 ntBASIC4.96□□□□□ -1.62
CCDC9Q9Y3X0 RNA5SP31-201ENST00000411144 127 ntBASIC4.96□□□□□ -1.62
CCDC9Q9Y3X0 AC005019.1-201ENST00000436455 431 ntBASIC4.96□□□□□ -1.62
CCDC9Q9Y3X0 HLA-N-201ENST00000437516 135 ntBASIC4.96□□□□□ -1.62
CCDC9Q9Y3X0 HMGB1P37-201ENST00000439613 609 ntBASIC4.96□□□□□ -1.62
CCDC9Q9Y3X0 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC9Q9Y3X0 AL671855.1-201ENST00000446875 1203 ntBASIC4.96□□□□□ -1.62
CCDC9Q9Y3X0 AC233279.1-201ENST00000455300 423 ntBASIC4.96□□□□□ -1.62
CCDC9Q9Y3X0 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC9Q9Y3X0 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC9Q9Y3X0 AC025281.1-201ENST00000567026 265 ntBASIC4.96□□□□□ -1.62
CCDC9Q9Y3X0 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC9Q9Y3X0 RDM1-219ENST00000615378 542 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC9Q9Y3X0 MIR6134-201ENST00000617606 109 ntBASIC4.96□□□□□ -1.62
CCDC9Q9Y3X0 SCARNA4-202ENST00000625402 129 ntBASIC4.96□□□□□ -1.62
CCDC9Q9Y3X0 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
CCDC9Q9Y3X0 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC9Q9Y3X0 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC9Q9Y3X0 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC9Q9Y3X0 AC008669.1-201ENST00000565823 2178 ntBASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 CEP170P1-201ENST00000502249 4587 ntBASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 COTL1P1-201ENST00000422309 375 ntBASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 EIF4EP1-201ENST00000422311 642 ntBASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 snoU109.2-201ENST00000459316 135 ntBASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 RN7SL330P-201ENST00000469709 307 ntBASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 AC113155.1-201ENST00000511141 769 ntBASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 SNORA25.17-201ENST00000517184 124 ntBASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 125.3 ms