Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 MIR218-1-201ENST00000384999 110 ntBASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 OR51A5P-201ENST00000415429 942 ntBASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 AC007560.1-201ENST00000426912 237 ntBASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 AL591212.2-201ENST00000433923 257 ntBASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 IFNA11P-201ENST00000446352 526 ntBASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 AL590365.1-201ENST00000450788 243 ntBASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 RNU6-581P-201ENST00000516214 105 ntBASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 AC012435.1-202ENST00000568772 240 ntBASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 ROCK1P1-201ENST00000573767 549 ntBASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 MIR5571-201ENST00000577998 113 ntBASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 AL160394.1-201ENST00000624765 724 ntBASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 AC017037.3-201ENST00000625016 472 ntBASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 PISRT1-201ENST00000626175 531 ntBASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 AL136360.1-201ENST00000503377 1900 ntBASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC40Q4G0X9 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 MIRLET7G-201ENST00000362280 84 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 U3.12-201ENST00000364498 214 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 Y_RNA.510-201ENST00000384511 114 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 Y_RNA.534-201ENST00000384599 112 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 RNU6-19P-201ENST00000384718 107 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 USP9YP6-201ENST00000413550 854 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 AC009963.1-201ENST00000417265 157 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 MORF4L1P6-201ENST00000418771 268 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 AL109913.1-201ENST00000421173 514 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 AC092001.1-201ENST00000453012 261 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 ZNF114P1-201ENST00000453500 292 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 SCARNA3-201ENST00000517097 143 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 AC011979.2-201ENST00000527568 352 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 AC010186.2-204ENST00000537668 439 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 AL021997.1-201ENST00000605757 193 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 AC026790.2-201ENST00000606282 430 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 AC022893.3-201ENST00000607665 437 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 AC004223.4-201ENST00000612426 332 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 AC130324.3-201ENST00000614165 542 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 AC245884.12-201ENST00000615364 59 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 MIR7844-201ENST00000616161 122 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 MIR6766-201ENST00000622641 72 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 CTSLP2-204ENST00000629029 392 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 MIR7157-201ENST00000635801 60 ntBASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.51□□□□□ -2.01
CCDC40Q4G0X9 AC004944.1-201ENST00000517807 3059 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 RNU6-960P-201ENST00000364056 120 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 RNU6-946P-201ENST00000383878 107 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 Y_RNA.608-201ENST00000410647 95 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 AC092809.3-201ENST00000415453 231 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 AC093899.1-201ENST00000457984 376 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 AL139824.2-201ENST00000458731 1095 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 AC119751.5-201ENST00000514077 770 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 RNU6-1129P-201ENST00000515964 104 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 RNU6-914P-201ENST00000516749 109 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 RNU6-677P-201ENST00000516914 101 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 AC025755.1-201ENST00000521306 278 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 MTCYBP20-201ENST00000524239 1129 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 AP001646.1-201ENST00000527936 915 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 AP003181.2-201ENST00000528941 181 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 AP000889.2-201ENST00000532684 490 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 MIR5007-201ENST00000583098 95 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 MIR4760-201ENST00000585040 80 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 CLPTM1LP1-201ENST00000604519 484 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 AC034229.4-201ENST00000607861 441 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 AL355816.2-201ENST00000610049 647 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 AC092140.2-201ENST00000618027 521 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 MIR6852-201ENST00000621699 66 ntBASIC2.5□□□□□ -2.01
CCDC40Q4G0X9 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms