Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RN7SKP219-201ENST00000516825 296 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 OR5AQ1P-201ENST00000527596 927 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AP005435.4-201ENST00000529514 284 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AL512360.1-201ENST00000555346 234 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AC025678.1-201ENST00000567861 338 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AC005951.1-201ENST00000576706 485 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AC008752.3-201ENST00000588113 712 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AC004805.2-201ENST00000605382 482 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AC008945.2-201ENST00000606056 604 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AC126118.1-201ENST00000607744 628 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AC093788.1-201ENST00000609356 927 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AC090517.2-201ENST00000614966 680 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AC099506.2-201ENST00000623074 221 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 Z99571.1-201ENST00000636677 394 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL28A1Q2UY09 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.13□□□□□ -1.91
COL28A1Q2UY09 MAPK10-322ENST00000641485 4530 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL28A1Q2UY09 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL28A1Q2UY09 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL28A1Q2UY09 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
COL28A1Q2UY09 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL28A1Q2UY09 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL28A1Q2UY09 RNA5SP197-201ENST00000363357 119 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 DYNLT3P1-201ENST00000378574 347 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
COL28A1Q2UY09 AL590002.1-201ENST00000406554 418 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 RNU2-68P-201ENST00000410878 191 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.12□□□□□ -1.91
COL28A1Q2UY09 OR6C66P-201ENST00000414917 930 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 NDUFB4P5-201ENST00000415445 361 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 AL139281.1-201ENST00000422120 335 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 AL160275.3-201ENST00000423876 471 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.12□□□□□ -1.91
COL28A1Q2UY09 RPL7P46-201ENST00000425129 740 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 MTCO3P30-201ENST00000426425 670 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.12□□□□□ -1.91
COL28A1Q2UY09 RPL23AP82-202ENST00000427528 469 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 RPL7P54-201ENST00000438336 674 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.12□□□□□ -1.91
COL28A1Q2UY09 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC3.12□□□□□ -1.91
COL28A1Q2UY09 AC003071.1-201ENST00000451219 789 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 AC010099.1-201ENST00000455434 375 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 HMGN1P18-201ENST00000457642 277 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.12□□□□□ -1.91
COL28A1Q2UY09 RPL23AP67-201ENST00000465341 474 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 RN7SL283P-201ENST00000489055 303 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.12□□□□□ -1.91
COL28A1Q2UY09 AC026801.1-201ENST00000497178 464 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 EIF4EP3-201ENST00000498782 656 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 RNU6-928P-201ENST00000516876 104 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 RNA5SP165-201ENST00000517142 115 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 IGHV3-76-201ENST00000522465 295 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 PSMA2P1-201ENST00000526365 646 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.12□□□□□ -1.91
COL28A1Q2UY09 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.12□□□□□ -1.91
COL28A1Q2UY09 MIR1273C-201ENST00000578669 77 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.12□□□□□ -1.91
COL28A1Q2UY09 AC092794.1-201ENST00000612734 582 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 AL512643.1-201ENST00000635735 524 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 U2.21-201ENST00000637295 81 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 MIR1321-201ENST00000637766 79 ntBASIC3.12□□□□□ -1.91
COL28A1Q2UY09 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.12□□□□□ -1.91
COL28A1Q2UY09 RNU6-1287P-201ENST00000362914 107 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 Y_RNA.255-201ENST00000364581 97 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 RNU6-1060P-201ENST00000384664 107 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 RNU6-550P-201ENST00000391057 101 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 Z99755.1-201ENST00000414048 380 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 AC099548.1-201ENST00000421443 426 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 RPL36AP53-201ENST00000432891 316 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 UBE2V1P8-201ENST00000437166 265 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 AC008264.1-201ENST00000447612 367 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
COL28A1Q2UY09 AC073415.1-201ENST00000449240 153 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 EEF1B2P7-201ENST00000451177 676 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 AL162395.1-201ENST00000457882 422 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.11□□□□□ -1.91
COL28A1Q2UY09 HMGN2P13-201ENST00000476476 274 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 AC021205.2-201ENST00000480069 347 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 AL163973.1-201ENST00000484753 577 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.11□□□□□ -1.91
COL28A1Q2UY09 AC092436.1-201ENST00000506450 503 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 AC011352.1-201ENST00000512300 793 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 Y_RNA.673-201ENST00000516306 88 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 RNU6-835P-201ENST00000516974 104 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC3.11□□□□□ -1.91
COL28A1Q2UY09 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC3.11□□□□□ -1.91
COL28A1Q2UY09 AP000867.2-201ENST00000532468 320 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.11□□□□□ -1.91
COL28A1Q2UY09 AK6P1-201ENST00000540219 478 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC3.11□□□□□ -1.91
COL28A1Q2UY09 AL163153.1-201ENST00000554223 283 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 AL157871.3-201ENST00000557231 293 ntBASIC3.11□□□□□ -1.91
COL28A1Q2UY09 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.11□□□□□ -1.91
COL28A1Q2UY09 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC3.11□□□□□ -1.91
COL28A1Q2UY09 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.11□□□□□ -1.91
COL28A1Q2UY09 MTATP6P3-201ENST00000581686 676 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms