Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.26□□□□□ -1.73
COL6A1P12109 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
COL6A1P12109 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL6A1P12109 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL6A1P12109 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL6A1P12109 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL6A1P12109 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL6A1P12109 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL6A1P12109 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
COL6A1P12109 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL6A1P12109 Y_RNA.5-201ENST00000362334 102 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 RNU6-1155P-201ENST00000363554 107 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 RNU6-434P-201ENST00000384376 107 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 RNU6-393P-201ENST00000384475 107 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 MIR128-1-201ENST00000384921 82 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 RPL7AP73-201ENST00000413490 353 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 RPLP0P7-201ENST00000416050 667 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 YPEL5P1-201ENST00000419731 367 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 AC018865.2-201ENST00000423631 129 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC4.26□□□□□ -1.73
COL6A1P12109 SNORD105B-201ENST00000458770 79 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 RNU7-167P-201ENST00000459160 62 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 RPL7P23-201ENST00000493874 747 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 AC116337.1-201ENST00000509680 687 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 TBCAP3-201ENST00000512475 312 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 RPL23AP94-201ENST00000512518 302 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 SNORA14.1-201ENST00000516113 141 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 RNU6-123P-201ENST00000516163 102 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 RNA5SP164-201ENST00000516533 110 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 RNU6-1213P-201ENST00000517075 94 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 RNU1-54P-201ENST00000517181 120 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC4.26□□□□□ -1.73
COL6A1P12109 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.26□□□□□ -1.73
COL6A1P12109 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.26□□□□□ -1.73
COL6A1P12109 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.26□□□□□ -1.73
COL6A1P12109 AC110588.1-201ENST00000559699 137 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC4.26□□□□□ -1.73
COL6A1P12109 AL139395.1-201ENST00000603662 160 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 AL158032.1-201ENST00000605401 106 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 AC005014.2-201ENST00000607795 599 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 AC011890.2-201ENST00000613393 294 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 MIR6130-201ENST00000619419 109 ntBASIC4.26□□□□□ -1.73
COL6A1P12109 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL6A1P12109 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL6A1P12109 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL6A1P12109 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.26□□□□□ -1.73
COL6A1P12109 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL6A1P12109 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.26□□□□□ -1.73
COL6A1P12109 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.26□□□□□ -1.73
COL6A1P12109 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
COL6A1P12109 AL136164.4-201ENST00000625013 2135 ntBASIC4.25□□□□□ -1.73
COL6A1P12109 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
COL6A1P12109 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL6A1P12109 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
COL6A1P12109 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
COL6A1P12109 Y_RNA.618-201ENST00000410949 107 ntBASIC4.25□□□□□ -1.73
COL6A1P12109 MTCO1P39-201ENST00000426148 480 ntBASIC4.25□□□□□ -1.73
COL6A1P12109 AC236972.1-201ENST00000433225 199 ntBASIC4.25□□□□□ -1.73
COL6A1P12109 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC4.25□□□□□ -1.73
COL6A1P12109 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.25□□□□□ -1.73
COL6A1P12109 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC4.25□□□□□ -1.73
COL6A1P12109 RN7SL807P-201ENST00000470923 297 ntBASIC4.25□□□□□ -1.73
COL6A1P12109 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.25□□□□□ -1.73
COL6A1P12109 AC015911.1-201ENST00000495111 156 ntBASIC4.25□□□□□ -1.73
COL6A1P12109 RNU6-764P-201ENST00000516396 105 ntBASIC4.25□□□□□ -1.73
COL6A1P12109 Y_RNA.708-201ENST00000516950 96 ntBASIC4.25□□□□□ -1.73
COL6A1P12109 AC008269.2-201ENST00000561915 1105 ntBASIC4.25□□□□□ -1.73
COL6A1P12109 RPL23AP84-201ENST00000571193 464 ntBASIC4.25□□□□□ -1.73
COL6A1P12109 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.25□□□□□ -1.73
COL6A1P12109 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC4.25□□□□□ -1.73
COL6A1P12109 VN1R107P-201ENST00000601784 209 ntBASIC4.25□□□□□ -1.73
COL6A1P12109 AC174048.1-201ENST00000603389 144 ntBASIC4.25□□□□□ -1.73
COL6A1P12109 AL034351.1-201ENST00000605288 668 ntBASIC4.25□□□□□ -1.73
COL6A1P12109 YPEL5P2-201ENST00000605553 359 ntBASIC4.25□□□□□ -1.73
COL6A1P12109 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC4.25□□□□□ -1.73
COL6A1P12109 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.25□□□□□ -1.73
COL6A1P12109 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC4.25□□□□□ -1.73
COL6A1P12109 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC4.25□□□□□ -1.73
COL6A1P12109 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL6A1P12109 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL6A1P12109 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.24□□□□□ -1.73
COL6A1P12109 EFTUD1P2-201ENST00000514817 1603 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC4.24□□□□□ -1.73
COL6A1P12109 ZNF807-201ENST00000328088 1707 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.24□□□□□ -1.73
COL6A1P12109 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
COL6A1P12109 RNU1-33P-201ENST00000364249 162 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 Y_RNA.252-201ENST00000364556 101 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 Y_RNA.364-201ENST00000365532 101 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 RNU6-701P-201ENST00000384059 107 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 RNU6-890P-201ENST00000384121 107 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 NDUFS5P1-201ENST00000405668 289 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 MIR548F4-201ENST00000408515 105 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 RNA5SP120-201ENST00000410900 112 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC4.24□□□□□ -1.73
COL6A1P12109 AL160004.2-201ENST00000432935 350 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC4.24□□□□□ -1.73
COL6A1P12109 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC4.24□□□□□ -1.73
COL6A1P12109 OARD1-209ENST00000471367 401 ntTSL 2 BASIC4.24□□□□□ -1.73
COL6A1P12109 AC010631.1-201ENST00000474150 156 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms