Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Scn11aQ9R053 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Scn11aQ9R053 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Scn11aQ9R053 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Scn11aQ9R053 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC19.11■□□□□ 0.65
Scn11aQ9R053 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Scn11aQ9R053 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
Scn11aQ9R053 Gm37153-201ENSMUST00000193637 231 ntBASIC19.11■□□□□ 0.65
Scn11aQ9R053 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Scn11aQ9R053 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn11aQ9R053 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC19.1■□□□□ 0.65
Scn11aQ9R053 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Scn11aQ9R053 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn11aQ9R053 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn11aQ9R053 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn11aQ9R053 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn11aQ9R053 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn11aQ9R053 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC19.1■□□□□ 0.65
Scn11aQ9R053 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC19.1■□□□□ 0.65
Scn11aQ9R053 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn11aQ9R053 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn11aQ9R053 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn11aQ9R053 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scn11aQ9R053 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn11aQ9R053 Rbfox2-206ENSMUST00000227314 1810 ntBASIC19.09■□□□□ 0.65
Scn11aQ9R053 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn11aQ9R053 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Scn11aQ9R053 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC19.09■□□□□ 0.65
Scn11aQ9R053 Gm13597-201ENSMUST00000121239 375 ntBASIC19.09■□□□□ 0.65
Scn11aQ9R053 AC147366.1-201ENSMUST00000227671 852 ntBASIC19.09■□□□□ 0.65
Scn11aQ9R053 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC19.09■□□□□ 0.65
Scn11aQ9R053 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn11aQ9R053 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Scn11aQ9R053 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn11aQ9R053 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn11aQ9R053 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn11aQ9R053 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn11aQ9R053 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn11aQ9R053 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Scn11aQ9R053 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Scn11aQ9R053 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC19.09■□□□□ 0.65
Scn11aQ9R053 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Scn11aQ9R053 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn11aQ9R053 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Scn11aQ9R053 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn11aQ9R053 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scn11aQ9R053 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Scn11aQ9R053 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Scn11aQ9R053 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Scn11aQ9R053 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Scn11aQ9R053 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Scn11aQ9R053 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
Scn11aQ9R053 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Scn11aQ9R053 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Scn11aQ9R053 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC19.08■□□□□ 0.64
Scn11aQ9R053 AC127302.2-201ENSMUST00000215212 268 ntBASIC19.08■□□□□ 0.64
Scn11aQ9R053 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Scn11aQ9R053 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Scn11aQ9R053 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Scn11aQ9R053 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Scn11aQ9R053 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Scn11aQ9R053 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Scn11aQ9R053 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Scn11aQ9R053 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Scn11aQ9R053 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC19.07■□□□□ 0.64
Scn11aQ9R053 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Scn11aQ9R053 Gm9682-201ENSMUST00000197505 556 ntBASIC19.07■□□□□ 0.64
Scn11aQ9R053 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC19.07■□□□□ 0.64
Scn11aQ9R053 AC090659.1-201ENSMUST00000224334 768 ntBASIC19.07■□□□□ 0.64
Scn11aQ9R053 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Scn11aQ9R053 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Scn11aQ9R053 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Scn11aQ9R053 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Scn11aQ9R053 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Scn11aQ9R053 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Scn11aQ9R053 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
Scn11aQ9R053 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Scn11aQ9R053 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Scn11aQ9R053 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Scn11aQ9R053 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Scn11aQ9R053 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Scn11aQ9R053 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Scn11aQ9R053 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC19.06■□□□□ 0.64
Scn11aQ9R053 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Scn11aQ9R053 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC19.06■□□□□ 0.64
Scn11aQ9R053 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Scn11aQ9R053 Ndufaf2-202ENSMUST00000223734 556 ntBASIC19.06■□□□□ 0.64
Scn11aQ9R053 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
Scn11aQ9R053 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Scn11aQ9R053 Gm11873-201ENSMUST00000117877 1304 ntBASIC19.06■□□□□ 0.64
Scn11aQ9R053 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Scn11aQ9R053 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Scn11aQ9R053 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Scn11aQ9R053 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC19.05■□□□□ 0.64
Scn11aQ9R053 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Scn11aQ9R053 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Scn11aQ9R053 Gm11185-201ENSMUST00000117732 1007 ntBASIC19.05■□□□□ 0.64
Scn11aQ9R053 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Scn11aQ9R053 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Scn11aQ9R053 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms