Protein–RNA interactions for Protein: Q9QXN0

Shroom3, Protein Shroom3, mousemouse

Predictions only

Length 1,986 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom3Q9QXN0 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Shroom3Q9QXN0 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Shroom3Q9QXN0 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Shroom3Q9QXN0 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Shroom3Q9QXN0 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
Shroom3Q9QXN0 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Shroom3Q9QXN0 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Shroom3Q9QXN0 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Shroom3Q9QXN0 Ighv6-1-201ENSMUST00000193612 343 ntBASIC16.2■□□□□ 0.18
Shroom3Q9QXN0 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Shroom3Q9QXN0 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Shroom3Q9QXN0 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Shroom3Q9QXN0 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Shroom3Q9QXN0 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Shroom3Q9QXN0 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Shroom3Q9QXN0 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Shroom3Q9QXN0 Gm43514-201ENSMUST00000198852 424 ntBASIC16.2■□□□□ 0.18
Shroom3Q9QXN0 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Shroom3Q9QXN0 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Shroom3Q9QXN0 Gm5867-201ENSMUST00000063197 592 ntBASIC16.2■□□□□ 0.18
Shroom3Q9QXN0 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Shroom3Q9QXN0 AC132265.1-201ENSMUST00000219233 1665 ntBASIC16.2■□□□□ 0.18
Shroom3Q9QXN0 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Shroom3Q9QXN0 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 AC069562.2-201ENSMUST00000224644 2146 ntBASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 AC114585.2-202ENSMUST00000228094 426 ntBASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shroom3Q9QXN0 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Gm13884-201ENSMUST00000118103 829 ntBASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shroom3Q9QXN0 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Shroom3Q9QXN0 Gm9889-202ENSMUST00000206983 1577 ntBASIC16.17■□□□□ 0.18
Shroom3Q9QXN0 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Shroom3Q9QXN0 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Shroom3Q9QXN0 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
Shroom3Q9QXN0 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Shroom3Q9QXN0 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC16.17■□□□□ 0.18
Shroom3Q9QXN0 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Shroom3Q9QXN0 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Shroom3Q9QXN0 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Shroom3Q9QXN0 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Shroom3Q9QXN0 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Shroom3Q9QXN0 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Shroom3Q9QXN0 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Shroom3Q9QXN0 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Shroom3Q9QXN0 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC16.17■□□□□ 0.18
Shroom3Q9QXN0 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Shroom3Q9QXN0 Gm27525-201ENSMUST00000184465 107 ntBASIC16.17■□□□□ 0.18
Shroom3Q9QXN0 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC16.17■□□□□ 0.18
Shroom3Q9QXN0 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Shroom3Q9QXN0 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Shroom3Q9QXN0 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Shroom3Q9QXN0 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Shroom3Q9QXN0 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Shroom3Q9QXN0 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Shroom3Q9QXN0 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Shroom3Q9QXN0 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Shroom3Q9QXN0 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Shroom3Q9QXN0 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Shroom3Q9QXN0 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms