Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Syne4Q8CII8 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC18.3■□□□□ 0.52
Syne4Q8CII8 Gm42939-201ENSMUST00000197514 2205 ntBASIC18.3■□□□□ 0.52
Syne4Q8CII8 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Syne4Q8CII8 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Syne4Q8CII8 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Syne4Q8CII8 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Syne4Q8CII8 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Gm14057-201ENSMUST00000120631 482 ntBASIC18.29■□□□□ 0.52
Syne4Q8CII8 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Gm11025-201ENSMUST00000140773 466 ntBASIC18.29■□□□□ 0.52
Syne4Q8CII8 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Gm27300-201ENSMUST00000184085 97 ntBASIC18.29■□□□□ 0.52
Syne4Q8CII8 Gm27335-201ENSMUST00000184758 97 ntBASIC18.29■□□□□ 0.52
Syne4Q8CII8 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Syne4Q8CII8 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
Syne4Q8CII8 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Syne4Q8CII8 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
Syne4Q8CII8 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Syne4Q8CII8 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Syne4Q8CII8 AC117588.1-201ENSMUST00000228510 999 ntBASIC18.28■□□□□ 0.52
Syne4Q8CII8 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Syne4Q8CII8 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Syne4Q8CII8 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Syne4Q8CII8 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC18.27■□□□□ 0.52
Syne4Q8CII8 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
Syne4Q8CII8 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Syne4Q8CII8 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Syne4Q8CII8 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Syne4Q8CII8 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Syne4Q8CII8 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Syne4Q8CII8 Gm4899-201ENSMUST00000178708 719 ntBASIC18.27■□□□□ 0.52
Syne4Q8CII8 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Syne4Q8CII8 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC18.27■□□□□ 0.52
Syne4Q8CII8 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Syne4Q8CII8 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Syne4Q8CII8 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Syne4Q8CII8 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Syne4Q8CII8 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Syne4Q8CII8 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Syne4Q8CII8 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Syne4Q8CII8 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Syne4Q8CII8 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Syne4Q8CII8 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Syne4Q8CII8 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Syne4Q8CII8 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC18.26■□□□□ 0.51
Syne4Q8CII8 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC18.26■□□□□ 0.51
Syne4Q8CII8 Gm37153-201ENSMUST00000193637 231 ntBASIC18.26■□□□□ 0.51
Syne4Q8CII8 AC158982.1-201ENSMUST00000228377 901 ntBASIC18.26■□□□□ 0.51
Syne4Q8CII8 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Syne4Q8CII8 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Syne4Q8CII8 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Syne4Q8CII8 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC18.26■□□□□ 0.51
Syne4Q8CII8 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Syne4Q8CII8 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Syne4Q8CII8 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Syne4Q8CII8 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Syne4Q8CII8 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms