Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC19.58■□□□□ 0.72
Brf1Q8CFK2 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC19.58■□□□□ 0.72
Brf1Q8CFK2 Gm27742-201ENSMUST00000184667 60 ntBASIC19.58■□□□□ 0.72
Brf1Q8CFK2 Ighv6-1-201ENSMUST00000193612 343 ntBASIC19.58■□□□□ 0.72
Brf1Q8CFK2 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Brf1Q8CFK2 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC19.58■□□□□ 0.72
Brf1Q8CFK2 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Brf1Q8CFK2 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Brf1Q8CFK2 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC19.58■□□□□ 0.72
Brf1Q8CFK2 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Brf1Q8CFK2 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Brf1Q8CFK2 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Brf1Q8CFK2 Ddx41-204ENSMUST00000224765 2199 ntBASIC19.57■□□□□ 0.72
Brf1Q8CFK2 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC19.57■□□□□ 0.72
Brf1Q8CFK2 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Brf1Q8CFK2 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Brf1Q8CFK2 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Brf1Q8CFK2 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Brf1Q8CFK2 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Brf1Q8CFK2 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Brf1Q8CFK2 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Brf1Q8CFK2 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Brf1Q8CFK2 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Brf1Q8CFK2 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Brf1Q8CFK2 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Brf1Q8CFK2 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Brf1Q8CFK2 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Brf1Q8CFK2 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Brf1Q8CFK2 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
Brf1Q8CFK2 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Brf1Q8CFK2 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Brf1Q8CFK2 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Brf1Q8CFK2 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Brf1Q8CFK2 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Brf1Q8CFK2 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Brf1Q8CFK2 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Brf1Q8CFK2 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Brf1Q8CFK2 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Brf1Q8CFK2 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Brf1Q8CFK2 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Brf1Q8CFK2 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Brf1Q8CFK2 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Brf1Q8CFK2 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Brf1Q8CFK2 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Brf1Q8CFK2 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Brf1Q8CFK2 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Brf1Q8CFK2 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Brf1Q8CFK2 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Brf1Q8CFK2 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
Brf1Q8CFK2 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Brf1Q8CFK2 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Brf1Q8CFK2 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Brf1Q8CFK2 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC19.55■□□□□ 0.72
Brf1Q8CFK2 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC19.55■□□□□ 0.72
Brf1Q8CFK2 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Brf1Q8CFK2 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Brf1Q8CFK2 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Brf1Q8CFK2 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Brf1Q8CFK2 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Brf1Q8CFK2 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Brf1Q8CFK2 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Brf1Q8CFK2 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Brf1Q8CFK2 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Brf1Q8CFK2 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Brf1Q8CFK2 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Brf1Q8CFK2 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Brf1Q8CFK2 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Brf1Q8CFK2 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Brf1Q8CFK2 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Brf1Q8CFK2 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Brf1Q8CFK2 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Brf1Q8CFK2 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Brf1Q8CFK2 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Brf1Q8CFK2 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
Brf1Q8CFK2 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Brf1Q8CFK2 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Brf1Q8CFK2 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Brf1Q8CFK2 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Brf1Q8CFK2 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Brf1Q8CFK2 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Brf1Q8CFK2 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Brf1Q8CFK2 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Brf1Q8CFK2 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
Brf1Q8CFK2 Gm6858-201ENSMUST00000208582 1468 ntBASIC19.54■□□□□ 0.72
Brf1Q8CFK2 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC19.54■□□□□ 0.72
Brf1Q8CFK2 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC19.53■□□□□ 0.72
Brf1Q8CFK2 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Brf1Q8CFK2 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Brf1Q8CFK2 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Brf1Q8CFK2 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC19.53■□□□□ 0.72
Brf1Q8CFK2 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Brf1Q8CFK2 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC19.53■□□□□ 0.72
Brf1Q8CFK2 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Brf1Q8CFK2 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Brf1Q8CFK2 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Brf1Q8CFK2 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Brf1Q8CFK2 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Brf1Q8CFK2 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Brf1Q8CFK2 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Brf1Q8CFK2 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms