Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim56Q80VI1 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim56Q80VI1 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
Trim56Q80VI1 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Trim56Q80VI1 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim56Q80VI1 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim56Q80VI1 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim56Q80VI1 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Trim56Q80VI1 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trim56Q80VI1 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim56Q80VI1 Gm28265-201ENSMUST00000188201 2319 ntBASIC19.1■□□□□ 0.65
Trim56Q80VI1 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim56Q80VI1 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC19.1■□□□□ 0.65
Trim56Q80VI1 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC19.1■□□□□ 0.65
Trim56Q80VI1 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trim56Q80VI1 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC19.1■□□□□ 0.65
Trim56Q80VI1 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim56Q80VI1 Birc2-201ENSMUST00000054878 378 ntBASIC19.1■□□□□ 0.65
Trim56Q80VI1 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Trim56Q80VI1 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim56Q80VI1 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim56Q80VI1 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC19.1■□□□□ 0.65
Trim56Q80VI1 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim56Q80VI1 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Trim56Q80VI1 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim56Q80VI1 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trim56Q80VI1 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trim56Q80VI1 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim56Q80VI1 Gm37166-201ENSMUST00000195473 2474 ntBASIC19.1■□□□□ 0.65
Trim56Q80VI1 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC19.09■□□□□ 0.65
Trim56Q80VI1 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trim56Q80VI1 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim56Q80VI1 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim56Q80VI1 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim56Q80VI1 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim56Q80VI1 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Trim56Q80VI1 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim56Q80VI1 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC19.09■□□□□ 0.65
Trim56Q80VI1 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Trim56Q80VI1 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trim56Q80VI1 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC19.09■□□□□ 0.65
Trim56Q80VI1 AC127349.1-201ENSMUST00000224590 266 ntBASIC19.09■□□□□ 0.65
Trim56Q80VI1 Cmtm5-203ENSMUST00000227441 610 ntBASIC19.09■□□□□ 0.65
Trim56Q80VI1 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim56Q80VI1 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim56Q80VI1 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
Trim56Q80VI1 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim56Q80VI1 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim56Q80VI1 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim56Q80VI1 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim56Q80VI1 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim56Q80VI1 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trim56Q80VI1 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC19.08■□□□□ 0.65
Trim56Q80VI1 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trim56Q80VI1 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC19.08■□□□□ 0.64
Trim56Q80VI1 Mir6404-201ENSMUST00000183699 94 ntBASIC19.08■□□□□ 0.64
Trim56Q80VI1 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC19.08■□□□□ 0.64
Trim56Q80VI1 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trim56Q80VI1 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
Trim56Q80VI1 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
Trim56Q80VI1 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trim56Q80VI1 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC19.08■□□□□ 0.64
Trim56Q80VI1 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trim56Q80VI1 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Trim56Q80VI1 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
Trim56Q80VI1 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trim56Q80VI1 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trim56Q80VI1 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trim56Q80VI1 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC19.08■□□□□ 0.64
Trim56Q80VI1 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC19.08■□□□□ 0.64
Trim56Q80VI1 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trim56Q80VI1 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trim56Q80VI1 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Trim56Q80VI1 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trim56Q80VI1 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trim56Q80VI1 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Trim56Q80VI1 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim56Q80VI1 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim56Q80VI1 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim56Q80VI1 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim56Q80VI1 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC19.07■□□□□ 0.64
Trim56Q80VI1 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim56Q80VI1 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim56Q80VI1 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim56Q80VI1 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim56Q80VI1 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Trim56Q80VI1 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC19.07■□□□□ 0.64
Trim56Q80VI1 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim56Q80VI1 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
Trim56Q80VI1 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim56Q80VI1 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Trim56Q80VI1 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim56Q80VI1 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim56Q80VI1 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim56Q80VI1 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC19.07■□□□□ 0.64
Trim56Q80VI1 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim56Q80VI1 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trim56Q80VI1 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trim56Q80VI1 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Trim56Q80VI1 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms