Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim28Q62318 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim28Q62318 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim28Q62318 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim28Q62318 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim28Q62318 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim28Q62318 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Trim28Q62318 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Trim28Q62318 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim28Q62318 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim28Q62318 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim28Q62318 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Trim28Q62318 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim28Q62318 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Trim28Q62318 AC084391.1-201ENSMUST00000200651 141 ntBASIC20.97■□□□□ 0.95
Trim28Q62318 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC20.97■□□□□ 0.95
Trim28Q62318 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC20.97■□□□□ 0.95
Trim28Q62318 Gm5364-201ENSMUST00000216789 889 ntBASIC20.97■□□□□ 0.95
Trim28Q62318 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim28Q62318 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC20.97■□□□□ 0.95
Trim28Q62318 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim28Q62318 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
Trim28Q62318 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim28Q62318 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Trim28Q62318 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC20.97■□□□□ 0.95
Trim28Q62318 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim28Q62318 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Trim28Q62318 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim28Q62318 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC20.97■□□□□ 0.95
Trim28Q62318 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC20.97■□□□□ 0.95
Trim28Q62318 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC20.97■□□□□ 0.95
Trim28Q62318 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim28Q62318 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim28Q62318 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim28Q62318 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC20.96■□□□□ 0.95
Trim28Q62318 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Trim28Q62318 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trim28Q62318 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC20.96■□□□□ 0.95
Trim28Q62318 Gm2308-201ENSMUST00000166539 1004 ntBASIC20.96■□□□□ 0.95
Trim28Q62318 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim28Q62318 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim28Q62318 AC154222.1-201ENSMUST00000223882 475 ntBASIC20.96■□□□□ 0.95
Trim28Q62318 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Trim28Q62318 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Trim28Q62318 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC20.96■□□□□ 0.95
Trim28Q62318 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trim28Q62318 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim28Q62318 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim28Q62318 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC20.96■□□□□ 0.95
Trim28Q62318 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC20.96■□□□□ 0.95
Trim28Q62318 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trim28Q62318 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
Trim28Q62318 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim28Q62318 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Trim28Q62318 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Trim28Q62318 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim28Q62318 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim28Q62318 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim28Q62318 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim28Q62318 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Trim28Q62318 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim28Q62318 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC20.95■□□□□ 0.94
Trim28Q62318 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim28Q62318 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Trim28Q62318 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC20.95■□□□□ 0.94
Trim28Q62318 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim28Q62318 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim28Q62318 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim28Q62318 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim28Q62318 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim28Q62318 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim28Q62318 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim28Q62318 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC20.95■□□□□ 0.94
Trim28Q62318 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim28Q62318 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Trim28Q62318 Wnt10b-206ENSMUST00000228546 2709 ntBASIC20.95■□□□□ 0.94
Trim28Q62318 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Trim28Q62318 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Trim28Q62318 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim28Q62318 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim28Q62318 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim28Q62318 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Trim28Q62318 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim28Q62318 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim28Q62318 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim28Q62318 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim28Q62318 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim28Q62318 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim28Q62318 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim28Q62318 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC20.94■□□□□ 0.94
Trim28Q62318 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC20.94■□□□□ 0.94
Trim28Q62318 AC093926.2-201ENSMUST00000214468 1228 ntBASIC20.94■□□□□ 0.94
Trim28Q62318 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC20.94■□□□□ 0.94
Trim28Q62318 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim28Q62318 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC20.94■□□□□ 0.94
Trim28Q62318 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim28Q62318 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC20.94■□□□□ 0.94
Trim28Q62318 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim28Q62318 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim28Q62318 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms