Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col11a1Q61245 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col11a1Q61245 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Col11a1Q61245 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Col11a1Q61245 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col11a1Q61245 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col11a1Q61245 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Col11a1Q61245 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col11a1Q61245 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col11a1Q61245 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Col11a1Q61245 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC18.05■□□□□ 0.48
Col11a1Q61245 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC18.05■□□□□ 0.48
Col11a1Q61245 Rpph1-201ENSMUST00000175096 319 ntBASIC18.05■□□□□ 0.48
Col11a1Q61245 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col11a1Q61245 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col11a1Q61245 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col11a1Q61245 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col11a1Q61245 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Col11a1Q61245 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Col11a1Q61245 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col11a1Q61245 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col11a1Q61245 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Col11a1Q61245 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Col11a1Q61245 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Col11a1Q61245 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col11a1Q61245 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Col11a1Q61245 Gm6226-201ENSMUST00000117765 1146 ntBASIC18.05■□□□□ 0.48
Col11a1Q61245 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC18.05■□□□□ 0.48
Col11a1Q61245 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC18.05■□□□□ 0.48
Col11a1Q61245 AC126408.1-201ENSMUST00000225184 523 ntBASIC18.05■□□□□ 0.48
Col11a1Q61245 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col11a1Q61245 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col11a1Q61245 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Col11a1Q61245 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col11a1Q61245 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
Col11a1Q61245 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col11a1Q61245 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col11a1Q61245 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Col11a1Q61245 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Col11a1Q61245 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col11a1Q61245 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC18.04■□□□□ 0.48
Col11a1Q61245 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Col11a1Q61245 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col11a1Q61245 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col11a1Q61245 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col11a1Q61245 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col11a1Q61245 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col11a1Q61245 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC18.04■□□□□ 0.48
Col11a1Q61245 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Col11a1Q61245 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC18.03■□□□□ 0.48
Col11a1Q61245 Gm20553-201ENSMUST00000204205 844 ntBASIC18.03■□□□□ 0.48
Col11a1Q61245 Gpr146-202ENSMUST00000053120 1040 ntBASIC18.03■□□□□ 0.48
Col11a1Q61245 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col11a1Q61245 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col11a1Q61245 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col11a1Q61245 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Col11a1Q61245 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col11a1Q61245 Gm12008-201ENSMUST00000117791 755 ntBASIC18.02■□□□□ 0.48
Col11a1Q61245 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Col11a1Q61245 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC18.02■□□□□ 0.48
Col11a1Q61245 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col11a1Q61245 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col11a1Q61245 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Col11a1Q61245 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col11a1Q61245 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
Col11a1Q61245 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col11a1Q61245 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col11a1Q61245 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Col11a1Q61245 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col11a1Q61245 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col11a1Q61245 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Col11a1Q61245 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Col11a1Q61245 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC18.02■□□□□ 0.47
Col11a1Q61245 Gm5745-201ENSMUST00000183748 313 ntBASIC18.02■□□□□ 0.47
Col11a1Q61245 AC124732.2-201ENSMUST00000221977 316 ntBASIC18.02■□□□□ 0.47
Col11a1Q61245 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Col11a1Q61245 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Col11a1Q61245 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Col11a1Q61245 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Col11a1Q61245 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.47
Col11a1Q61245 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Col11a1Q61245 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
Col11a1Q61245 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC18.01■□□□□ 0.47
Col11a1Q61245 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col11a1Q61245 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col11a1Q61245 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col11a1Q61245 AC126250.1-201ENSMUST00000228343 1768 ntBASIC18.01■□□□□ 0.47
Col11a1Q61245 Gm22065-201ENSMUST00000103753 110 ntBASIC18.01■□□□□ 0.47
Col11a1Q61245 Gm22066-201ENSMUST00000103761 110 ntBASIC18.01■□□□□ 0.47
Col11a1Q61245 Gm24932-201ENSMUST00000103763 110 ntBASIC18.01■□□□□ 0.47
Col11a1Q61245 Gm24115-201ENSMUST00000103799 110 ntBASIC18.01■□□□□ 0.47
Col11a1Q61245 Gm22190-201ENSMUST00000103827 110 ntBASIC18.01■□□□□ 0.47
Col11a1Q61245 Gm22191-201ENSMUST00000103831 110 ntBASIC18.01■□□□□ 0.47
Col11a1Q61245 Gm24721-201ENSMUST00000103849 110 ntBASIC18.01■□□□□ 0.47
Col11a1Q61245 Gm28018-201ENSMUST00000103869 110 ntBASIC18.01■□□□□ 0.47
Col11a1Q61245 Gm26399-201ENSMUST00000103937 110 ntBASIC18.01■□□□□ 0.47
Col11a1Q61245 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Col11a1Q61245 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col11a1Q61245 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col11a1Q61245 Gm25349-201ENSMUST00000177728 110 ntBASIC18.01■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms