Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Usp28Q5I043 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp28Q5I043 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp28Q5I043 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp28Q5I043 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Usp28Q5I043 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp28Q5I043 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp28Q5I043 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Usp28Q5I043 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp28Q5I043 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp28Q5I043 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Usp28Q5I043 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC18.42■□□□□ 0.54
Usp28Q5I043 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Usp28Q5I043 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC18.42■□□□□ 0.54
Usp28Q5I043 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC18.42■□□□□ 0.54
Usp28Q5I043 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp28Q5I043 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Usp28Q5I043 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp28Q5I043 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Usp28Q5I043 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp28Q5I043 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp28Q5I043 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp28Q5I043 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Usp28Q5I043 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp28Q5I043 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Usp28Q5I043 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp28Q5I043 Gm8668-201ENSMUST00000120559 1447 ntBASIC18.41■□□□□ 0.54
Usp28Q5I043 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Usp28Q5I043 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp28Q5I043 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp28Q5I043 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp28Q5I043 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
Usp28Q5I043 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp28Q5I043 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp28Q5I043 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC18.41■□□□□ 0.54
Usp28Q5I043 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp28Q5I043 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC18.41■□□□□ 0.54
Usp28Q5I043 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
Usp28Q5I043 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp28Q5I043 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp28Q5I043 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
Usp28Q5I043 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp28Q5I043 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Usp28Q5I043 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp28Q5I043 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Usp28Q5I043 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp28Q5I043 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp28Q5I043 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC18.4■□□□□ 0.54
Usp28Q5I043 Gm18959-201ENSMUST00000208954 655 ntBASIC18.4■□□□□ 0.54
Usp28Q5I043 Spcs1-207ENSMUST00000228767 1008 ntBASIC18.4■□□□□ 0.54
Usp28Q5I043 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp28Q5I043 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp28Q5I043 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC18.4■□□□□ 0.54
Usp28Q5I043 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Usp28Q5I043 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Usp28Q5I043 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Usp28Q5I043 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp28Q5I043 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Usp28Q5I043 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
Usp28Q5I043 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
Usp28Q5I043 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Usp28Q5I043 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Usp28Q5I043 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
Usp28Q5I043 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Usp28Q5I043 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Usp28Q5I043 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Usp28Q5I043 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Usp28Q5I043 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Usp28Q5I043 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Usp28Q5I043 Gm15565-201ENSMUST00000118890 427 ntBASIC18.39■□□□□ 0.53
Usp28Q5I043 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Usp28Q5I043 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Usp28Q5I043 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Usp28Q5I043 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Usp28Q5I043 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Usp28Q5I043 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Usp28Q5I043 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Usp28Q5I043 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC18.38■□□□□ 0.53
Usp28Q5I043 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC18.38■□□□□ 0.53
Usp28Q5I043 Gm37722-201ENSMUST00000193757 208 ntBASIC18.38■□□□□ 0.53
Usp28Q5I043 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Usp28Q5I043 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Usp28Q5I043 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Usp28Q5I043 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Usp28Q5I043 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Usp28Q5I043 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Usp28Q5I043 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
Usp28Q5I043 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Usp28Q5I043 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Usp28Q5I043 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Usp28Q5I043 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Usp28Q5I043 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp28Q5I043 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp28Q5I043 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp28Q5I043 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp28Q5I043 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Usp28Q5I043 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Usp28Q5I043 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Usp28Q5I043 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp28Q5I043 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 44.8 ms