Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Upf3aQ3ULJ3 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Upf3aQ3ULJ3 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Upf3aQ3ULJ3 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Upf3aQ3ULJ3 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Upf3aQ3ULJ3 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3aQ3ULJ3 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC17■□□□□ 0.31
Upf3aQ3ULJ3 AC122901.1-201ENSMUST00000214203 1790 ntBASIC17■□□□□ 0.31
Upf3aQ3ULJ3 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Upf3aQ3ULJ3 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC17■□□□□ 0.31
Upf3aQ3ULJ3 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Upf3aQ3ULJ3 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC17■□□□□ 0.31
Upf3aQ3ULJ3 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC17■□□□□ 0.31
Upf3aQ3ULJ3 Gm45683-201ENSMUST00000210825 1247 ntBASIC17■□□□□ 0.31
Upf3aQ3ULJ3 Gm18622-201ENSMUST00000219361 595 ntBASIC17■□□□□ 0.31
Upf3aQ3ULJ3 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Upf3aQ3ULJ3 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC17■□□□□ 0.31
Upf3aQ3ULJ3 Gm15743-202ENSMUST00000182690 1901 ntBASIC17■□□□□ 0.31
Upf3aQ3ULJ3 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3aQ3ULJ3 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3aQ3ULJ3 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3aQ3ULJ3 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3aQ3ULJ3 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3aQ3ULJ3 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Upf3aQ3ULJ3 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3aQ3ULJ3 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC16.98■□□□□ 0.31
Upf3aQ3ULJ3 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC16.98■□□□□ 0.31
Upf3aQ3ULJ3 AC090659.1-201ENSMUST00000224334 768 ntBASIC16.98■□□□□ 0.31
Upf3aQ3ULJ3 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
Upf3aQ3ULJ3 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3aQ3ULJ3 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3aQ3ULJ3 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3aQ3ULJ3 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3aQ3ULJ3 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3aQ3ULJ3 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3aQ3ULJ3 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3aQ3ULJ3 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC16.97■□□□□ 0.31
Upf3aQ3ULJ3 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3aQ3ULJ3 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3aQ3ULJ3 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3aQ3ULJ3 Gm23935-201ENSMUST00000102303 57 ntBASIC16.97■□□□□ 0.31
Upf3aQ3ULJ3 Gm24270-201ENSMUST00000102326 57 ntBASIC16.97■□□□□ 0.31
Upf3aQ3ULJ3 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3aQ3ULJ3 Gm24245-201ENSMUST00000157318 57 ntBASIC16.97■□□□□ 0.31
Upf3aQ3ULJ3 Gm27646-201ENSMUST00000183989 110 ntBASIC16.97■□□□□ 0.31
Upf3aQ3ULJ3 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC16.97■□□□□ 0.31
Upf3aQ3ULJ3 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC16.97■□□□□ 0.31
Upf3aQ3ULJ3 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3aQ3ULJ3 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3aQ3ULJ3 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3aQ3ULJ3 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 63.6 ms