Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ptchd3Q0EEE2 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ptchd3Q0EEE2 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ptchd3Q0EEE2 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ptchd3Q0EEE2 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC15.7■□□□□ 0.1
Ptchd3Q0EEE2 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ptchd3Q0EEE2 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ptchd3Q0EEE2 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ptchd3Q0EEE2 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Ptchd3Q0EEE2 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ptchd3Q0EEE2 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ptchd3Q0EEE2 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ptchd3Q0EEE2 Gm7638-201ENSMUST00000121348 967 ntBASIC15.69■□□□□ 0.1
Ptchd3Q0EEE2 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC15.69■□□□□ 0.1
Ptchd3Q0EEE2 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC15.69■□□□□ 0.1
Ptchd3Q0EEE2 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC15.69■□□□□ 0.1
Ptchd3Q0EEE2 Arhgef4-208ENSMUST00000211073 171 ntBASIC15.69■□□□□ 0.1
Ptchd3Q0EEE2 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Ptchd3Q0EEE2 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ptchd3Q0EEE2 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC15.69■□□□□ 0.1
Ptchd3Q0EEE2 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC15.69■□□□□ 0.1
Ptchd3Q0EEE2 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ptchd3Q0EEE2 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ptchd3Q0EEE2 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ptchd3Q0EEE2 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ptchd3Q0EEE2 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Mir5122-201ENSMUST00000175004 89 ntBASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ptchd3Q0EEE2 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Ptchd3Q0EEE2 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ptchd3Q0EEE2 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Ptchd3Q0EEE2 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC15.67■□□□□ 0.1
Ptchd3Q0EEE2 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Ptchd3Q0EEE2 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC15.67■□□□□ 0.1
Ptchd3Q0EEE2 Gm17661-201ENSMUST00000170317 270 ntBASIC15.67■□□□□ 0.1
Ptchd3Q0EEE2 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
Ptchd3Q0EEE2 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC15.67■□□□□ 0.1
Ptchd3Q0EEE2 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ptchd3Q0EEE2 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ptchd3Q0EEE2 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC15.67■□□□□ 0.1
Ptchd3Q0EEE2 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Ptchd3Q0EEE2 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ptchd3Q0EEE2 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ptchd3Q0EEE2 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Ptchd3Q0EEE2 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Ptchd3Q0EEE2 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
Ptchd3Q0EEE2 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Ptchd3Q0EEE2 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC15.67■□□□□ 0.1
Ptchd3Q0EEE2 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ptchd3Q0EEE2 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ptchd3Q0EEE2 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ptchd3Q0EEE2 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC15.66■□□□□ 0.1
Ptchd3Q0EEE2 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Ptchd3Q0EEE2 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ptchd3Q0EEE2 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ptchd3Q0EEE2 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC15.66■□□□□ 0.1
Ptchd3Q0EEE2 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC15.66■□□□□ 0.1
Ptchd3Q0EEE2 Gm27000-201ENSMUST00000182943 842 ntBASIC15.66■□□□□ 0.1
Ptchd3Q0EEE2 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC15.66■□□□□ 0.1
Ptchd3Q0EEE2 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC15.66■□□□□ 0.1
Ptchd3Q0EEE2 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ptchd3Q0EEE2 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ptchd3Q0EEE2 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC15.66■□□□□ 0.1
Ptchd3Q0EEE2 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ptchd3Q0EEE2 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ptchd3Q0EEE2 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ptchd3Q0EEE2 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ptchd3Q0EEE2 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
Ptchd3Q0EEE2 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ptchd3Q0EEE2 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 45.1 ms