Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ercc3P49135 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ercc3P49135 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ercc3P49135 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ercc3P49135 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
Ercc3P49135 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC19.2■□□□□ 0.66
Ercc3P49135 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Ercc3P49135 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Ercc3P49135 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ercc3P49135 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ercc3P49135 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Ercc3P49135 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ercc3P49135 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ercc3P49135 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ercc3P49135 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ercc3P49135 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ercc3P49135 Haglr-201ENSMUST00000100000 2085 ntBASIC19.2■□□□□ 0.66
Ercc3P49135 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ercc3P49135 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Ercc3P49135 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ercc3P49135 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Ercc3P49135 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ercc3P49135 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ercc3P49135 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Ercc3P49135 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ercc3P49135 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ercc3P49135 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ercc3P49135 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Ercc3P49135 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ercc3P49135 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ercc3P49135 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC19.19■□□□□ 0.66
Ercc3P49135 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC19.19■□□□□ 0.66
Ercc3P49135 Gm44430-201ENSMUST00000203376 995 ntBASIC19.19■□□□□ 0.66
Ercc3P49135 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC19.19■□□□□ 0.66
Ercc3P49135 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ercc3P49135 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ercc3P49135 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ercc3P49135 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ercc3P49135 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ercc3P49135 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ercc3P49135 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ercc3P49135 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ercc3P49135 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ercc3P49135 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ercc3P49135 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ercc3P49135 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ercc3P49135 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ercc3P49135 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Ercc3P49135 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ercc3P49135 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ercc3P49135 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
Ercc3P49135 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Ercc3P49135 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Ercc3P49135 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC19.18■□□□□ 0.66
Ercc3P49135 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ercc3P49135 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Ercc3P49135 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Ercc3P49135 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ercc3P49135 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ercc3P49135 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ercc3P49135 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ercc3P49135 Ighv6-1-201ENSMUST00000193612 343 ntBASIC19.18■□□□□ 0.66
Ercc3P49135 Gm36967-201ENSMUST00000193814 266 ntBASIC19.18■□□□□ 0.66
Ercc3P49135 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ercc3P49135 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ercc3P49135 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ercc3P49135 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ercc3P49135 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ercc3P49135 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ercc3P49135 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ercc3P49135 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ercc3P49135 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ercc3P49135 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ercc3P49135 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ercc3P49135 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ercc3P49135 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ercc3P49135 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ercc3P49135 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ercc3P49135 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ercc3P49135 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
Ercc3P49135 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC19.17■□□□□ 0.66
Ercc3P49135 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ercc3P49135 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ercc3P49135 CT009713.7-201ENSMUST00000224689 571 ntBASIC19.17■□□□□ 0.66
Ercc3P49135 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ercc3P49135 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
Ercc3P49135 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ercc3P49135 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ercc3P49135 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ercc3P49135 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ercc3P49135 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ercc3P49135 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ercc3P49135 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ercc3P49135 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC19.17■□□□□ 0.66
Ercc3P49135 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ercc3P49135 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Ercc3P49135 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ercc3P49135 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC19.16■□□□□ 0.66
Ercc3P49135 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ercc3P49135 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms