Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rfx1P48377 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Rfx1P48377 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC19.42■□□□□ 0.7
Rfx1P48377 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rfx1P48377 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Rfx1P48377 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Rfx1P48377 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
Rfx1P48377 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC19.41■□□□□ 0.7
Rfx1P48377 Gm42473-201ENSMUST00000201056 2291 ntBASIC19.41■□□□□ 0.7
Rfx1P48377 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rfx1P48377 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rfx1P48377 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rfx1P48377 AC154412.1-201ENSMUST00000226540 2786 ntBASIC19.41■□□□□ 0.7
Rfx1P48377 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Rfx1P48377 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Rfx1P48377 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC19.41■□□□□ 0.7
Rfx1P48377 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC19.41■□□□□ 0.7
Rfx1P48377 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rfx1P48377 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Rfx1P48377 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC19.41■□□□□ 0.7
Rfx1P48377 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Rfx1P48377 Slc35b2-202ENSMUST00000223987 1766 ntBASIC19.41■□□□□ 0.7
Rfx1P48377 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Rfx1P48377 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Rfx1P48377 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rfx1P48377 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rfx1P48377 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC19.41■□□□□ 0.7
Rfx1P48377 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rfx1P48377 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rfx1P48377 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rfx1P48377 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rfx1P48377 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC19.4■□□□□ 0.7
Rfx1P48377 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rfx1P48377 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Rfx1P48377 Gm44616-201ENSMUST00000206417 1732 ntBASIC19.4■□□□□ 0.7
Rfx1P48377 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rfx1P48377 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Rfx1P48377 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rfx1P48377 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Rfx1P48377 Gm16042-201ENSMUST00000204813 1247 ntBASIC19.4■□□□□ 0.7
Rfx1P48377 AC175538.1-201ENSMUST00000225343 1269 ntBASIC19.4■□□□□ 0.7
Rfx1P48377 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rfx1P48377 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rfx1P48377 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Rfx1P48377 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rfx1P48377 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Rfx1P48377 Actl10-202ENSMUST00000226583 1501 ntBASIC19.4■□□□□ 0.7
Rfx1P48377 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rfx1P48377 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Rfx1P48377 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.7
Rfx1P48377 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rfx1P48377 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rfx1P48377 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rfx1P48377 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Rfx1P48377 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rfx1P48377 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC19.39■□□□□ 0.69
Rfx1P48377 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Rfx1P48377 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Rfx1P48377 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Rfx1P48377 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rfx1P48377 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rfx1P48377 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rfx1P48377 Phf7-203ENSMUST00000226565 1971 ntBASIC19.39■□□□□ 0.69
Rfx1P48377 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC19.39■□□□□ 0.69
Rfx1P48377 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Rfx1P48377 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rfx1P48377 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rfx1P48377 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
Rfx1P48377 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Rfx1P48377 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Rfx1P48377 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rfx1P48377 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
Rfx1P48377 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC19.38■□□□□ 0.69
Rfx1P48377 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Rfx1P48377 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
Rfx1P48377 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rfx1P48377 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rfx1P48377 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rfx1P48377 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rfx1P48377 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rfx1P48377 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rfx1P48377 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC19.37■□□□□ 0.69
Rfx1P48377 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Rfx1P48377 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rfx1P48377 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Rfx1P48377 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Rfx1P48377 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rfx1P48377 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rfx1P48377 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC19.37■□□□□ 0.69
Rfx1P48377 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rfx1P48377 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Rfx1P48377 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Rfx1P48377 Mir1199-201ENSMUST00000117015 119 ntBASIC19.37■□□□□ 0.69
Rfx1P48377 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC19.37■□□□□ 0.69
Rfx1P48377 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rfx1P48377 Otx2os1-204ENSMUST00000227221 751 ntBASIC19.37■□□□□ 0.69
Rfx1P48377 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rfx1P48377 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Rfx1P48377 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rfx1P48377 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms