Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col2a1P28481 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Col2a1P28481 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Col2a1P28481 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col2a1P28481 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Col2a1P28481 Gm11185-201ENSMUST00000117732 1007 ntBASIC18.29■□□□□ 0.52
Col2a1P28481 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC18.29■□□□□ 0.52
Col2a1P28481 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col2a1P28481 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC18.29■□□□□ 0.52
Col2a1P28481 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col2a1P28481 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col2a1P28481 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col2a1P28481 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Col2a1P28481 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col2a1P28481 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col2a1P28481 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col2a1P28481 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Col2a1P28481 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col2a1P28481 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Col2a1P28481 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC18.28■□□□□ 0.52
Col2a1P28481 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC18.28■□□□□ 0.52
Col2a1P28481 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC18.28■□□□□ 0.52
Col2a1P28481 Gm9682-201ENSMUST00000197505 556 ntBASIC18.28■□□□□ 0.52
Col2a1P28481 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Col2a1P28481 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col2a1P28481 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col2a1P28481 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col2a1P28481 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Col2a1P28481 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Col2a1P28481 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col2a1P28481 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col2a1P28481 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Col2a1P28481 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
Col2a1P28481 AC147366.1-201ENSMUST00000227671 852 ntBASIC18.27■□□□□ 0.52
Col2a1P28481 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col2a1P28481 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Col2a1P28481 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col2a1P28481 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Col2a1P28481 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col2a1P28481 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col2a1P28481 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col2a1P28481 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC18.27■□□□□ 0.52
Col2a1P28481 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col2a1P28481 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col2a1P28481 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Col2a1P28481 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Col2a1P28481 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col2a1P28481 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC18.26■□□□□ 0.51
Col2a1P28481 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
Col2a1P28481 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC18.26■□□□□ 0.51
Col2a1P28481 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC18.26■□□□□ 0.51
Col2a1P28481 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC18.26■□□□□ 0.51
Col2a1P28481 AC131709.1-201ENSMUST00000224731 1180 ntBASIC18.26■□□□□ 0.51
Col2a1P28481 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col2a1P28481 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col2a1P28481 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col2a1P28481 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Col2a1P28481 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col2a1P28481 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col2a1P28481 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC18.26■□□□□ 0.51
Col2a1P28481 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col2a1P28481 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col2a1P28481 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC18.26■□□□□ 0.51
Col2a1P28481 Gm5253-201ENSMUST00000187104 1025 ntBASIC18.26■□□□□ 0.51
Col2a1P28481 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC18.26■□□□□ 0.51
Col2a1P28481 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col2a1P28481 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC18.26■□□□□ 0.51
Col2a1P28481 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC18.26■□□□□ 0.51
Col2a1P28481 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Col2a1P28481 Gm5867-201ENSMUST00000063197 592 ntBASIC18.26■□□□□ 0.51
Col2a1P28481 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col2a1P28481 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col2a1P28481 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col2a1P28481 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col2a1P28481 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
Col2a1P28481 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col2a1P28481 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col2a1P28481 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col2a1P28481 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col2a1P28481 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC18.25■□□□□ 0.51
Col2a1P28481 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col2a1P28481 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col2a1P28481 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col2a1P28481 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col2a1P28481 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col2a1P28481 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col2a1P28481 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col2a1P28481 Gm11594-201ENSMUST00000122313 162 ntBASIC18.25■□□□□ 0.51
Col2a1P28481 Gm4899-201ENSMUST00000178708 719 ntBASIC18.25■□□□□ 0.51
Col2a1P28481 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col2a1P28481 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col2a1P28481 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col2a1P28481 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Col2a1P28481 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Col2a1P28481 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Col2a1P28481 Haglr-201ENSMUST00000100000 2085 ntBASIC18.24■□□□□ 0.51
Col2a1P28481 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col2a1P28481 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC18.24■□□□□ 0.51
Col2a1P28481 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col2a1P28481 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms