Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxd3P09027 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxd3P09027 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC12.59□□□□□ -0.39
Hoxd3P09027 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC12.59□□□□□ -0.39
Hoxd3P09027 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC12.59□□□□□ -0.39
Hoxd3P09027 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxd3P09027 AC108846.1-201ENSMUST00000214531 513 ntBASIC12.59□□□□□ -0.39
Hoxd3P09027 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxd3P09027 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Hoxd3P09027 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxd3P09027 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxd3P09027 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxd3P09027 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxd3P09027 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxd3P09027 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxd3P09027 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxd3P09027 Ptprs-211ENSMUST00000223859 5588 ntBASIC12.59□□□□□ -0.39
Hoxd3P09027 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC12.59□□□□□ -0.39
Hoxd3P09027 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxd3P09027 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxd3P09027 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxd3P09027 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Hoxd3P09027 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Hoxd3P09027 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
Hoxd3P09027 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC12.58□□□□□ -0.4
Hoxd3P09027 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Hoxd3P09027 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Hoxd3P09027 Gm15372-201ENSMUST00000120729 834 ntBASIC12.58□□□□□ -0.4
Hoxd3P09027 Il4-203ENSMUST00000140684 530 ntTSL 2 BASIC12.58□□□□□ -0.4
Hoxd3P09027 Il4-204ENSMUST00000150568 605 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC12.58□□□□□ -0.4
Hoxd3P09027 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC12.58□□□□□ -0.4
Hoxd3P09027 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC12.58□□□□□ -0.4
Hoxd3P09027 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC12.58□□□□□ -0.4
Hoxd3P09027 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Il4-201ENSMUST00000000889 590 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
Hoxd3P09027 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Hoxd3P09027 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC12.58□□□□□ -0.4
Hoxd3P09027 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxd3P09027 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hoxd3P09027 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hoxd3P09027 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Hoxd3P09027 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC12.57□□□□□ -0.4
Hoxd3P09027 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Hoxd3P09027 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hoxd3P09027 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hoxd3P09027 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hoxd3P09027 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Hoxd3P09027 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hoxd3P09027 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC12.57□□□□□ -0.4
Hoxd3P09027 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC12.57□□□□□ -0.4
Hoxd3P09027 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC12.57□□□□□ -0.4
Hoxd3P09027 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC12.57□□□□□ -0.4
Hoxd3P09027 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Hoxd3P09027 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC12.57□□□□□ -0.4
Hoxd3P09027 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hoxd3P09027 Gm34391-201ENSMUST00000203706 907 ntBASIC12.57□□□□□ -0.4
Hoxd3P09027 AC132260.2-201ENSMUST00000224482 344 ntBASIC12.57□□□□□ -0.4
Hoxd3P09027 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hoxd3P09027 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hoxd3P09027 Birc2-201ENSMUST00000054878 378 ntBASIC12.57□□□□□ -0.4
Hoxd3P09027 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hoxd3P09027 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hoxd3P09027 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Hoxd3P09027 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hoxd3P09027 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC12.57□□□□□ -0.4
Hoxd3P09027 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hoxd3P09027 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hoxd3P09027 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hoxd3P09027 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC12.57□□□□□ -0.4
Hoxd3P09027 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hoxd3P09027 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Hoxd3P09027 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Hoxd3P09027 4930433J02Rik-201ENSMUST00000194719 1386 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC12.56□□□□□ -0.4
Hoxd3P09027 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Hoxd3P09027 Slc35b2-202ENSMUST00000223987 1766 ntBASIC12.56□□□□□ -0.4
Hoxd3P09027 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms