Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col3a1P08121 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col3a1P08121 AC122901.1-201ENSMUST00000214203 1790 ntBASIC19.25■□□□□ 0.67
Col3a1P08121 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col3a1P08121 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Col3a1P08121 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Col3a1P08121 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col3a1P08121 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col3a1P08121 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
Col3a1P08121 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col3a1P08121 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col3a1P08121 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col3a1P08121 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col3a1P08121 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col3a1P08121 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC19.24■□□□□ 0.67
Col3a1P08121 Gm5264-201ENSMUST00000190584 848 ntBASIC19.24■□□□□ 0.67
Col3a1P08121 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col3a1P08121 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col3a1P08121 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col3a1P08121 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col3a1P08121 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
Col3a1P08121 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col3a1P08121 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col3a1P08121 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col3a1P08121 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col3a1P08121 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Col3a1P08121 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
Col3a1P08121 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col3a1P08121 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col3a1P08121 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col3a1P08121 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col3a1P08121 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Col3a1P08121 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col3a1P08121 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col3a1P08121 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col3a1P08121 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col3a1P08121 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col3a1P08121 Gm10175-201ENSMUST00000086013 645 ntBASIC19.23■□□□□ 0.67
Col3a1P08121 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col3a1P08121 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col3a1P08121 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Col3a1P08121 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Col3a1P08121 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col3a1P08121 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col3a1P08121 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col3a1P08121 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col3a1P08121 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col3a1P08121 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col3a1P08121 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col3a1P08121 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col3a1P08121 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col3a1P08121 Gm37153-201ENSMUST00000193637 231 ntBASIC19.22■□□□□ 0.67
Col3a1P08121 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Col3a1P08121 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Col3a1P08121 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col3a1P08121 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col3a1P08121 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col3a1P08121 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC19.22■□□□□ 0.67
Col3a1P08121 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Col3a1P08121 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col3a1P08121 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col3a1P08121 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col3a1P08121 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col3a1P08121 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col3a1P08121 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col3a1P08121 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col3a1P08121 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col3a1P08121 Gm27702-201ENSMUST00000184512 56 ntBASIC19.22■□□□□ 0.67
Col3a1P08121 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col3a1P08121 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col3a1P08121 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col3a1P08121 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col3a1P08121 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col3a1P08121 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col3a1P08121 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
Col3a1P08121 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC19.21■□□□□ 0.67
Col3a1P08121 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col3a1P08121 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC19.21■□□□□ 0.67
Col3a1P08121 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col3a1P08121 Gm14494-201ENSMUST00000118786 435 ntBASIC19.21■□□□□ 0.67
Col3a1P08121 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC19.21■□□□□ 0.67
Col3a1P08121 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC19.21■□□□□ 0.67
Col3a1P08121 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC19.21■□□□□ 0.67
Col3a1P08121 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC19.21■□□□□ 0.67
Col3a1P08121 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Col3a1P08121 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Col3a1P08121 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col3a1P08121 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col3a1P08121 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col3a1P08121 Gm11873-201ENSMUST00000117877 1304 ntBASIC19.21■□□□□ 0.67
Col3a1P08121 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Col3a1P08121 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col3a1P08121 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col3a1P08121 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC19.2■□□□□ 0.66
Col3a1P08121 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col3a1P08121 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col3a1P08121 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col3a1P08121 Gm15358-201ENSMUST00000119249 520 ntBASIC19.2■□□□□ 0.66
Col3a1P08121 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col3a1P08121 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms