Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 RPS29P15-201ENST00000458329 171 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 RNU7-182P-201ENST00000459009 62 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 RPL27AP5-201ENST00000469428 449 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 AC103975.1-201ENST00000482506 483 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 RNU6-720P-201ENST00000516363 108 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 RNU6-685P-201ENST00000517088 95 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 MIR4775-201ENST00000581168 75 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 MIR4444-1-201ENST00000581696 74 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 MIR4444-2-201ENST00000584390 74 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 AC080078.2-201ENST00000603766 501 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 AC004832.5-201ENST00000608677 401 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 AC011155.2-201ENST00000623202 216 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 SEPT14P19-203ENST00000633205 211 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 OR5AK4P-201ENST00000635912 903 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 U6.114-201ENST00000636407 96 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 AC093010.3-201ENST00000570269 15214 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 RNA5SP72-201ENST00000364442 117 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 RNU6-606P-201ENST00000384721 111 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 MIR23B-201ENST00000384832 97 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 AL160275.3-201ENST00000423876 471 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 AL353729.1-201ENST00000425044 720 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 HMGB1P9-201ENST00000429856 646 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 AC003982.1-202ENST00000469928 248 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 RPL9P33-201ENST00000484311 566 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 AC104806.1-201ENST00000508720 308 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 RNU6-703P-201ENST00000516946 107 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 AC009902.1-201ENST00000519351 183 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 AC022634.1-201ENST00000520765 532 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 MIR1273C-201ENST00000578669 77 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 DEFB131E-202ENST00000602581 683 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 AC007938.3-201ENST00000604965 623 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 AC008536.2-201ENST00000607284 349 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 AC126118.1-201ENST00000607744 628 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 AC087241.4-201ENST00000612441 480 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 AC024940.5-201ENST00000622889 474 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 AC110079.1-202ENST00000635213 138 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 AC092593.1-201ENST00000515413 1815 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 ZNF680P1-201ENST00000436625 1469 ntBASIC3.13□□□□□ -1.91
LIMA1Q9UHB6 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 NACAP2-201ENST00000318548 624 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 Y_RNA.3-201ENST00000362331 103 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 Y_RNA.33-201ENST00000362591 102 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 RNA5SP139-201ENST00000364340 117 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 RNVU1-14-201ENST00000384770 164 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 RNU6-1025P-201ENST00000410629 104 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 RNA5SP111-201ENST00000411386 101 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 OR51A5P-201ENST00000415429 942 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 CALM2P2-201ENST00000428512 440 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 MTND1P34-201ENST00000438556 671 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 AL162395.1-201ENST00000457882 422 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 RN7SL807P-201ENST00000470923 297 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 RN7SL297P-201ENST00000483161 293 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 RPS3AP14-201ENST00000483907 780 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 AC107401.1-201ENST00000503426 685 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 RAC1P5-201ENST00000512182 576 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 RNA5SP503-201ENST00000517047 117 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 OR5BN1P-201ENST00000532955 829 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 AC245505.1-201ENST00000556398 224 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 EIF1P4-201ENST00000572664 335 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 AC023043.3-201ENST00000593113 385 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 AC024220.1-201ENST00000603675 484 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 YPEL5P2-201ENST00000605553 359 ntBASIC3.12□□□□□ -1.91
LIMA1Q9UHB6 AC005046.1-201ENST00000608515 625 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 127.5 ms