Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 RNU1-15P-201ENST00000353977 144 ntBASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 RNU6-82P-201ENST00000363970 107 ntBASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 RNU6-166P-201ENST00000384371 107 ntBASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 SNORA48.5-201ENST00000391143 135 ntBASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 RNU4-26P-201ENST00000410270 107 ntBASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 BX682237.1-201ENST00000415016 335 ntBASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 AL353621.1-201ENST00000418219 243 ntBASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 AL627311.1-201ENST00000431514 115 ntBASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 RBMX2P4-201ENST00000441256 376 ntBASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 NDUFB1P2-201ENST00000449477 176 ntBASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 AL136097.1-201ENST00000456945 913 ntBASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 RNU7-170P-201ENST00000459303 61 ntBASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 OARD1-209ENST00000471367 401 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 Y_RNA.654-201ENST00000497848 106 ntBASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 PRDX4P1-201ENST00000507189 574 ntBASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 MIR892C-201ENST00000516410 77 ntBASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 AC135507.2-201ENST00000612443 309 ntBASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 AL355365.1-201ENST00000616480 294 ntBASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 5S_rRNA.12-201ENST00000617631 107 ntBASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 MIR8057-201ENST00000620957 69 ntBASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC9Q9Y3X0 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 Y_RNA.157-201ENST00000363638 102 ntBASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 Y_RNA.480-201ENST00000384364 102 ntBASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 RNA5SP219-201ENST00000390940 113 ntBASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 MIR1251-201ENST00000408552 70 ntBASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 AL645937.1-202ENST00000421799 937 ntBASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 AC008155.2-201ENST00000464337 397 ntBASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 AC069439.1-201ENST00000494739 167 ntBASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 RNU6-189P-201ENST00000516120 101 ntBASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 AC092747.3-201ENST00000603769 301 ntBASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 AC015813.4-201ENST00000610469 179 ntBASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 MIR7702-201ENST00000621931 59 ntBASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 AC004944.1-201ENST00000517807 3059 ntBASIC5.08□□□□□ -1.6
CCDC9Q9Y3X0 IDE-202ENST00000371581 4480 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 MIR34A-201ENST00000385130 110 ntBASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 HDGFP1-201ENST00000405943 252 ntBASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 VDAC1P9-201ENST00000412766 841 ntBASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 SRIP2-201ENST00000428470 166 ntBASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 DYNLL1P5-201ENST00000467158 270 ntBASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 RPL23AP65-201ENST00000475608 468 ntBASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 AC026784.1-201ENST00000507986 352 ntBASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 HIGD1AP13-201ENST00000509878 289 ntBASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 RNU6-358P-201ENST00000516564 75 ntBASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 NARSP2-201ENST00000518524 679 ntBASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 AC100770.1-201ENST00000532310 322 ntBASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 OR11H5P-201ENST00000554039 926 ntBASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 LRRC37A5P-203ENST00000580181 585 ntBASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 AC092807.2-201ENST00000609367 243 ntBASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 AL031601.2-202ENST00000622650 282 ntBASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 AC110491.1-201ENST00000562191 2010 ntBASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC9Q9Y3X0 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 UBE3AP2-201ENST00000429033 2259 ntBASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 Y_RNA.378-201ENST00000365652 113 ntBASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 MIR10A-201ENST00000385043 110 ntBASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 RNU6-607P-201ENST00000411283 108 ntBASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 POLHP1-201ENST00000411806 470 ntBASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 AC005326.1-201ENST00000429197 123 ntBASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 MRPS31P2-201ENST00000451581 518 ntBASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 SNORD105B-201ENST00000458770 79 ntBASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms