Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RPL23AP70-201ENST00000483361 460 ntBASIC3.45□□□□□ -1.86
CTCFP49711 RNA5SP385-201ENST00000515947 110 ntBASIC3.45□□□□□ -1.86
CTCFP49711 RNU2-10P-201ENST00000516375 211 ntBASIC3.45□□□□□ -1.86
CTCFP49711 RNU6-405P-201ENST00000516637 110 ntBASIC3.45□□□□□ -1.86
CTCFP49711 AC245166.1-201ENST00000521012 253 ntBASIC3.45□□□□□ -1.86
CTCFP49711 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.45□□□□□ -1.86
CTCFP49711 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.45□□□□□ -1.86
CTCFP49711 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.45□□□□□ -1.86
CTCFP49711 MTND1P15-201ENST00000579262 949 ntBASIC3.45□□□□□ -1.86
CTCFP49711 DPPA3P3-201ENST00000603842 430 ntBASIC3.45□□□□□ -1.86
CTCFP49711 AC091834.1-201ENST00000614543 472 ntBASIC3.45□□□□□ -1.86
CTCFP49711 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CTCFP49711 AC099842.1-201ENST00000619919 596 ntBASIC3.45□□□□□ -1.86
CTCFP49711 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CTCFP49711 AC096644.4-201ENST00000563417 2912 ntBASIC3.45□□□□□ -1.86
CTCFP49711 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.45□□□□□ -1.86
CTCFP49711 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.44□□□□□ -1.86
CTCFP49711 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CTCFP49711 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
CTCFP49711 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CTCFP49711 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
CTCFP49711 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.44□□□□□ -1.86
CTCFP49711 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CTCFP49711 RNU6-623P-201ENST00000363143 105 ntBASIC3.44□□□□□ -1.86
CTCFP49711 RNU6-169P-201ENST00000365336 107 ntBASIC3.44□□□□□ -1.86
CTCFP49711 NDUFS5P1-201ENST00000405668 289 ntBASIC3.44□□□□□ -1.86
CTCFP49711 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC3.44□□□□□ -1.86
CTCFP49711 ZNF90P2-204ENST00000419323 1075 ntBASIC3.44□□□□□ -1.86
CTCFP49711 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC3.44□□□□□ -1.86
CTCFP49711 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.44□□□□□ -1.86
CTCFP49711 ARPC3P1-201ENST00000437218 533 ntBASIC3.44□□□□□ -1.86
CTCFP49711 HMGB3P11-201ENST00000440127 604 ntBASIC3.44□□□□□ -1.86
CTCFP49711 AL136380.1-201ENST00000447970 162 ntBASIC3.44□□□□□ -1.86
CTCFP49711 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.44□□□□□ -1.86
CTCFP49711 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.44□□□□□ -1.86
CTCFP49711 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.44□□□□□ -1.86
CTCFP49711 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.44□□□□□ -1.86
CTCFP49711 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.44□□□□□ -1.86
CTCFP49711 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC3.44□□□□□ -1.86
CTCFP49711 SNORA31.26-201ENST00000517250 137 ntBASIC3.44□□□□□ -1.86
CTCFP49711 MTCO2P4-201ENST00000517968 247 ntBASIC3.44□□□□□ -1.86
CTCFP49711 OR5G4P-201ENST00000525251 760 ntBASIC3.44□□□□□ -1.86
CTCFP49711 AP006587.4-201ENST00000526053 529 ntBASIC3.44□□□□□ -1.86
CTCFP49711 DNAJC8P1-201ENST00000554535 372 ntBASIC3.44□□□□□ -1.86
CTCFP49711 RPS3AP4-201ENST00000555161 764 ntBASIC3.44□□□□□ -1.86
CTCFP49711 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC3.44□□□□□ -1.86
CTCFP49711 MIR4648-201ENST00000580107 72 ntBASIC3.44□□□□□ -1.86
CTCFP49711 MIR3609-201ENST00000582661 80 ntBASIC3.44□□□□□ -1.86
CTCFP49711 AC078899.3-201ENST00000599065 212 ntBASIC3.44□□□□□ -1.86
CTCFP49711 AC027309.3-201ENST00000623419 351 ntBASIC3.44□□□□□ -1.86
CTCFP49711 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CTCFP49711 AC022336.2-201ENST00000568966 2538 ntBASIC3.44□□□□□ -1.86
CTCFP49711 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
CTCFP49711 AC008264.2-201ENST00000610193 3731 ntBASIC3.44□□□□□ -1.86
CTCFP49711 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
CTCFP49711 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.43□□□□□ -1.86
CTCFP49711 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
CTCFP49711 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
CTCFP49711 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.43□□□□□ -1.86
CTCFP49711 RNU6-701P-201ENST00000384059 107 ntBASIC3.43□□□□□ -1.86
CTCFP49711 SNORD116-4-201ENST00000384733 96 ntBASIC3.43□□□□□ -1.86
CTCFP49711 AL139397.2-201ENST00000404529 772 ntBASIC3.43□□□□□ -1.86
CTCFP49711 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
CTCFP49711 RNU2-16P-201ENST00000410712 136 ntBASIC3.43□□□□□ -1.86
CTCFP49711 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.43□□□□□ -1.86
CTCFP49711 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC3.43□□□□□ -1.86
CTCFP49711 AC092573.2-201ENST00000434546 243 ntBASIC3.43□□□□□ -1.86
CTCFP49711 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC3.43□□□□□ -1.86
CTCFP49711 RPS3P1-201ENST00000456781 192 ntBASIC3.43□□□□□ -1.86
CTCFP49711 AL135752.1-201ENST00000479477 471 ntBASIC3.43□□□□□ -1.86
CTCFP49711 AC091435.1-201ENST00000505442 584 ntBASIC3.43□□□□□ -1.86
CTCFP49711 RN7SKP298-201ENST00000515950 94 ntBASIC3.43□□□□□ -1.86
CTCFP49711 SNORA31.3-201ENST00000516029 96 ntBASIC3.43□□□□□ -1.86
CTCFP49711 RNU6-927P-201ENST00000516199 100 ntBASIC3.43□□□□□ -1.86
CTCFP49711 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.43□□□□□ -1.86
CTCFP49711 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.43□□□□□ -1.86
CTCFP49711 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.43□□□□□ -1.86
CTCFP49711 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC3.43□□□□□ -1.86
CTCFP49711 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC3.43□□□□□ -1.86
CTCFP49711 MIR4506-201ENST00000584693 77 ntBASIC3.43□□□□□ -1.86
CTCFP49711 GLUD1P4-201ENST00000590914 418 ntBASIC3.43□□□□□ -1.86
CTCFP49711 AC024153.1-201ENST00000603103 365 ntBASIC3.43□□□□□ -1.86
CTCFP49711 AC245014.2-201ENST00000603689 287 ntBASIC3.43□□□□□ -1.86
CTCFP49711 AL136363.1-201ENST00000605349 337 ntBASIC3.43□□□□□ -1.86
CTCFP49711 AC246785.4-201ENST00000605374 287 ntBASIC3.43□□□□□ -1.86
CTCFP49711 AP002360.4-201ENST00000606980 481 ntBASIC3.43□□□□□ -1.86
CTCFP49711 AC005332.10-201ENST00000612725 619 ntBASIC3.43□□□□□ -1.86
CTCFP49711 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
CTCFP49711 AC010680.1-201ENST00000590024 3590 ntBASIC3.43□□□□□ -1.86
CTCFP49711 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
CTCFP49711 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CTCFP49711 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.42□□□□□ -1.86
CTCFP49711 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CTCFP49711 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CTCFP49711 Z98742.3-201ENST00000418637 326 ntBASIC3.42□□□□□ -1.86
CTCFP49711 RAC1P6-201ENST00000423911 575 ntBASIC3.42□□□□□ -1.86
CTCFP49711 OR2AS1P-201ENST00000427827 319 ntBASIC3.42□□□□□ -1.86
CTCFP49711 AC093106.2-201ENST00000428212 385 ntBASIC3.42□□□□□ -1.86
CTCFP49711 RNU6-420P-201ENST00000458780 107 ntBASIC3.42□□□□□ -1.86
CTCFP49711 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms