Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC3.98□□□□□ -1.77
NUP88Q99567 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.98□□□□□ -1.77
NUP88Q99567 AL158071.1-201ENST00000430315 461 ntBASIC3.98□□□□□ -1.77
NUP88Q99567 RPL36AP53-201ENST00000432891 316 ntBASIC3.98□□□□□ -1.77
NUP88Q99567 HMGB1P31-201ENST00000437242 427 ntBASIC3.98□□□□□ -1.77
NUP88Q99567 AL353572.1-201ENST00000442490 417 ntBASIC3.98□□□□□ -1.77
NUP88Q99567 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC3.98□□□□□ -1.77
NUP88Q99567 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.98□□□□□ -1.77
NUP88Q99567 RPL32P34-201ENST00000486380 400 ntBASIC3.98□□□□□ -1.77
NUP88Q99567 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.98□□□□□ -1.77
NUP88Q99567 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.98□□□□□ -1.77
NUP88Q99567 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.98□□□□□ -1.77
NUP88Q99567 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.98□□□□□ -1.77
NUP88Q99567 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
NUP88Q99567 AC015917.1-201ENST00000579654 510 ntBASIC3.98□□□□□ -1.77
NUP88Q99567 MIR4425-201ENST00000580572 84 ntBASIC3.98□□□□□ -1.77
NUP88Q99567 AC002076.2-201ENST00000617362 122 ntBASIC3.98□□□□□ -1.77
NUP88Q99567 AC027309.3-201ENST00000623419 351 ntBASIC3.98□□□□□ -1.77
NUP88Q99567 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.98□□□□□ -1.77
NUP88Q99567 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
NUP88Q99567 PWAR6-201ENST00000552334 4618 ntBASIC3.98□□□□□ -1.77
NUP88Q99567 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.98□□□□□ -1.77
NUP88Q99567 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
NUP88Q99567 ZNF807-201ENST00000328088 1707 ntBASIC3.98□□□□□ -1.77
NUP88Q99567 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
NUP88Q99567 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
NUP88Q99567 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.97□□□□□ -1.77
NUP88Q99567 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.97□□□□□ -1.77
NUP88Q99567 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
NUP88Q99567 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
NUP88Q99567 MIR301A-201ENST00000385261 86 ntBASIC3.97□□□□□ -1.77
NUP88Q99567 RPS4XP3-201ENST00000398541 413 ntBASIC3.97□□□□□ -1.77
NUP88Q99567 RNU6-193P-201ENST00000410977 107 ntBASIC3.97□□□□□ -1.77
NUP88Q99567 RNU6-373P-201ENST00000411247 98 ntBASIC3.97□□□□□ -1.77
NUP88Q99567 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.97□□□□□ -1.77
NUP88Q99567 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
NUP88Q99567 AC009237.5-201ENST00000414271 501 ntBASIC3.97□□□□□ -1.77
NUP88Q99567 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.97□□□□□ -1.77
NUP88Q99567 AC004801.2-202ENST00000463559 283 ntBASIC3.97□□□□□ -1.77
NUP88Q99567 RPL21P99-201ENST00000480369 423 ntBASIC3.97□□□□□ -1.77
NUP88Q99567 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.97□□□□□ -1.77
NUP88Q99567 SNORA70.14-201ENST00000516205 110 ntBASIC3.97□□□□□ -1.77
NUP88Q99567 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.97□□□□□ -1.77
NUP88Q99567 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.97□□□□□ -1.77
NUP88Q99567 AC026333.2-201ENST00000542164 106 ntBASIC3.97□□□□□ -1.77
NUP88Q99567 BNIP3P6-201ENST00000549284 499 ntBASIC3.97□□□□□ -1.77
NUP88Q99567 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.97□□□□□ -1.77
NUP88Q99567 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.97□□□□□ -1.77
NUP88Q99567 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
NUP88Q99567 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.97□□□□□ -1.77
NUP88Q99567 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.97□□□□□ -1.77
NUP88Q99567 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.97□□□□□ -1.77
NUP88Q99567 AL162713.1-201ENST00000604480 262 ntBASIC3.97□□□□□ -1.77
NUP88Q99567 AC009570.1-201ENST00000609599 745 ntBASIC3.97□□□□□ -1.77
NUP88Q99567 RMST_3.1-201ENST00000611651 109 ntBASIC3.97□□□□□ -1.77
NUP88Q99567 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.97□□□□□ -1.77
NUP88Q99567 AC007256.1-201ENST00000392253 2765 ntBASIC3.97□□□□□ -1.77
NUP88Q99567 CASC19-280ENST00000642102 1351 ntBASIC3.97□□□□□ -1.77
NUP88Q99567 AC093536.2-201ENST00000565257 1406 ntBASIC3.96□□□□□ -1.77
NUP88Q99567 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.96□□□□□ -1.78
NUP88Q99567 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
NUP88Q99567 AP000567.1-201ENST00000406413 156 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.96□□□□□ -1.78
NUP88Q99567 AC063979.1-201ENST00000415539 377 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.96□□□□□ -1.78
NUP88Q99567 ZNF863P-201ENST00000426746 417 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 HMGB3P11-201ENST00000440127 604 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 CYCSP32-201ENST00000440548 321 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 MTCO2P3-201ENST00000442543 421 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 Z75741.1-201ENST00000446793 314 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 MTND4P18-201ENST00000447010 465 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 MTND3P16-201ENST00000452205 344 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 CECR9-201ENST00000453421 199 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 HMGN2P7-201ENST00000456186 273 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.96□□□□□ -1.78
NUP88Q99567 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.96□□□□□ -1.78
NUP88Q99567 RPL21P13-201ENST00000488305 481 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 FCF1P3-201ENST00000496394 590 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 RPL38P4-201ENST00000502376 214 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.96□□□□□ -1.78
NUP88Q99567 AL137161.1-201ENST00000532231 390 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 AC005476.1-201ENST00000554427 397 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.96□□□□□ -1.78
NUP88Q99567 MIR548S-201ENST00000581352 82 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.96□□□□□ -1.78
NUP88Q99567 MIR4276-201ENST00000584832 70 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.96□□□□□ -1.78
NUP88Q99567 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
NUP88Q99567 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.96□□□□□ -1.78
NUP88Q99567 AL356274.2-201ENST00000624379 3752 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
NUP88Q99567 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
NUP88Q99567 AC068647.1-201ENST00000489539 2265 ntBASIC3.96□□□□□ -1.78
NUP88Q99567 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
NUP88Q99567 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
NUP88Q99567 AL139276.1-201ENST00000311910 1001 ntBASIC3.95□□□□□ -1.78
NUP88Q99567 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.95□□□□□ -1.78
NUP88Q99567 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 138.2 ms