Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
FOXA1P55317 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
FOXA1P55317 ZBTB8OSP1-201ENST00000342688 498 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 SNORD48-201ENST00000364953 64 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 RNA5SP88-201ENST00000365560 109 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 RNU6-741P-201ENST00000383889 107 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 RNU6-1072P-201ENST00000384703 107 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 RNU6-443P-201ENST00000384780 107 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 AL079342.1-201ENST00000401460 267 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 AL109755.1-201ENST00000401791 649 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 RNU6-516P-201ENST00000411381 104 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC1.77□□□□□ -2.13
FOXA1P55317 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.77□□□□□ -2.13
FOXA1P55317 AC092047.1-201ENST00000424997 240 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 AL358075.3-201ENST00000426289 226 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC1.77□□□□□ -2.13
FOXA1P55317 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC1.77□□□□□ -2.13
FOXA1P55317 SNRPEP7-201ENST00000438350 220 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 Z82210.1-201ENST00000440037 231 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 AL049734.2-201ENST00000441066 616 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 USP9YP15-201ENST00000442391 422 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC1.77□□□□□ -2.13
FOXA1P55317 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC1.77□□□□□ -2.13
FOXA1P55317 MTCYBP3-201ENST00000445588 1137 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 IFNA11P-201ENST00000446352 526 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 AL031313.1-201ENST00000448435 256 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 RPS15AP27-201ENST00000449183 343 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 FABP5P13-201ENST00000452144 328 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 MTND1P9-201ENST00000453775 944 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC1.77□□□□□ -2.13
FOXA1P55317 AC233279.1-201ENST00000455300 423 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 RNU7-23P-201ENST00000459465 62 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 RPS20P20-201ENST00000460498 340 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC1.77□□□□□ -2.13
FOXA1P55317 RPS27P21-201ENST00000486977 252 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 RPS29P20-201ENST00000489592 171 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
FOXA1P55317 AC092436.1-201ENST00000506450 503 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 AC022447.3-201ENST00000506865 495 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 NRON-201ENST00000517270 370 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC1.77□□□□□ -2.13
FOXA1P55317 AL138976.2-201ENST00000563989 694 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC1.77□□□□□ -2.13
FOXA1P55317 AC010546.1-201ENST00000569391 485 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 MIR4419B-201ENST00000577260 68 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 MIR4524B-201ENST00000581569 115 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC1.77□□□□□ -2.13
FOXA1P55317 AL139344.1-201ENST00000605228 195 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 AC005014.3-201ENST00000605985 190 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 AC090186.1-201ENST00000605991 572 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC1.77□□□□□ -2.13
FOXA1P55317 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC1.77□□□□□ -2.13
FOXA1P55317 AL157392.4-201ENST00000609756 345 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
FOXA1P55317 AC013476.2-201ENST00000614456 459 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 AL138713.1-201ENST00000624026 2130 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 AC019226.1-201ENST00000625666 515 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.77□□□□□ -2.13
FOXA1P55317 AL445984.1-201ENST00000637834 659 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 AC099063.3-201ENST00000642066 185 ntBASIC1.77□□□□□ -2.13
FOXA1P55317 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC1.77□□□□□ -2.13
FOXA1P55317 AC099786.3-201ENST00000565735 1410 ntBASIC1.76□□□□□ -2.13
FOXA1P55317 DDX10P1-201ENST00000448545 1933 ntBASIC1.76□□□□□ -2.13
FOXA1P55317 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC1.76□□□□□ -2.13
FOXA1P55317 RNU4-68P-201ENST00000364314 141 ntBASIC1.76□□□□□ -2.13
FOXA1P55317 RNU6-754P-201ENST00000391166 107 ntBASIC1.76□□□□□ -2.13
FOXA1P55317 RNU4-26P-201ENST00000410270 107 ntBASIC1.76□□□□□ -2.13
FOXA1P55317 AC003685.2-201ENST00000422795 395 ntBASIC1.76□□□□□ -2.13
FOXA1P55317 AC007919.1-201ENST00000429380 217 ntBASIC1.76□□□□□ -2.13
FOXA1P55317 PIGFP3-201ENST00000441918 722 ntBASIC1.76□□□□□ -2.13
FOXA1P55317 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC1.76□□□□□ -2.13
FOXA1P55317 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
FOXA1P55317 USP9YP10-201ENST00000454868 628 ntBASIC1.76□□□□□ -2.13
FOXA1P55317 AP1S2P1-201ENST00000457344 379 ntBASIC1.76□□□□□ -2.13
FOXA1P55317 RPL31P41-201ENST00000477967 372 ntBASIC1.76□□□□□ -2.13
FOXA1P55317 AC134050.1-201ENST00000495088 933 ntBASIC1.76□□□□□ -2.13
FOXA1P55317 AC138853.1-201ENST00000503549 823 ntBASIC1.76□□□□□ -2.13
FOXA1P55317 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC1.76□□□□□ -2.13
FOXA1P55317 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC1.76□□□□□ -2.13
FOXA1P55317 LIAS-206ENST00000513731 826 ntTSL 5 BASIC1.76□□□□□ -2.13
FOXA1P55317 MTND2P7-201ENST00000521337 640 ntBASIC1.76□□□□□ -2.13
FOXA1P55317 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC1.76□□□□□ -2.13
FOXA1P55317 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC1.76□□□□□ -2.13
FOXA1P55317 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC1.76□□□□□ -2.13
FOXA1P55317 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC1.76□□□□□ -2.13
FOXA1P55317 AC090616.3-201ENST00000582184 217 ntBASIC1.76□□□□□ -2.13
FOXA1P55317 AC068790.3-201ENST00000602988 553 ntBASIC1.76□□□□□ -2.13
FOXA1P55317 BNIP3P10-201ENST00000605360 577 ntBASIC1.76□□□□□ -2.13
FOXA1P55317 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC1.76□□□□□ -2.13
FOXA1P55317 AC093838.1-201ENST00000613014 469 ntBASIC1.76□□□□□ -2.13
FOXA1P55317 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC1.76□□□□□ -2.13
FOXA1P55317 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC1.76□□□□□ -2.13
FOXA1P55317 AC099654.9-201ENST00000637055 678 ntBASIC1.76□□□□□ -2.13
FOXA1P55317 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC1.76□□□□□ -2.13
FOXA1P55317 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
FOXA1P55317 AC104454.1-201ENST00000421341 1401 ntBASIC1.75□□□□□ -2.13
FOXA1P55317 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
FOXA1P55317 AC022336.2-201ENST00000568966 2538 ntBASIC1.75□□□□□ -2.13
FOXA1P55317 RNU6-217P-201ENST00000384164 104 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms