Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC2.55□□□□□ -2
MSH6P52701 AC079395.1-201ENST00000510981 262 ntBASIC2.55□□□□□ -2
MSH6P52701 AC107393.1-201ENST00000512403 346 ntBASIC2.55□□□□□ -2
MSH6P52701 MTATP6P9-201ENST00000515039 680 ntBASIC2.55□□□□□ -2
MSH6P52701 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.55□□□□□ -2
MSH6P52701 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.55□□□□□ -2
MSH6P52701 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC2.55□□□□□ -2
MSH6P52701 MTCYBP23-201ENST00000558717 1102 ntBASIC2.55□□□□□ -2
MSH6P52701 AL512347.1-201ENST00000566420 503 ntBASIC2.55□□□□□ -2
MSH6P52701 MYL12BP1-201ENST00000569826 507 ntBASIC2.55□□□□□ -2
MSH6P52701 AC004987.4-201ENST00000603383 338 ntBASIC2.55□□□□□ -2
MSH6P52701 HSPE1P7-201ENST00000604681 321 ntBASIC2.55□□□□□ -2
MSH6P52701 AC109809.1-201ENST00000619665 545 ntBASIC2.55□□□□□ -2
MSH6P52701 AC002550.2-201ENST00000621246 394 ntBASIC2.55□□□□□ -2
MSH6P52701 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC2.55□□□□□ -2
MSH6P52701 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC2.55□□□□□ -2
MSH6P52701 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
MSH6P52701 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.55□□□□□ -2
MSH6P52701 AC008568.2-201ENST00000623862 2313 ntBASIC2.54□□□□□ -2
MSH6P52701 AL391987.6-201ENST00000305671 199 ntBASIC2.54□□□□□ -2
MSH6P52701 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC2.54□□□□□ -2
MSH6P52701 Y_RNA.311-201ENST00000365068 96 ntBASIC2.54□□□□□ -2
MSH6P52701 Y_RNA.327-201ENST00000365201 102 ntBASIC2.54□□□□□ -2
MSH6P52701 SNORD116.1-201ENST00000365628 92 ntBASIC2.54□□□□□ -2
MSH6P52701 AC090774.1-201ENST00000435925 246 ntBASIC2.54□□□□□ -2
MSH6P52701 EEF1A1P39-201ENST00000440791 250 ntBASIC2.54□□□□□ -2
MSH6P52701 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC2.54□□□□□ -2
MSH6P52701 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC2.54□□□□□ -2
MSH6P52701 PPP1R2P5-201ENST00000457256 603 ntBASIC2.54□□□□□ -2
MSH6P52701 SNORD121B-201ENST00000458838 81 ntBASIC2.54□□□□□ -2
MSH6P52701 AC025033.1-201ENST00000463883 194 ntBASIC2.54□□□□□ -2
MSH6P52701 RPL31P60-201ENST00000478450 367 ntBASIC2.54□□□□□ -2
MSH6P52701 AC134050.1-201ENST00000495088 933 ntBASIC2.54□□□□□ -2
MSH6P52701 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC2.54□□□□□ -2
MSH6P52701 SEM1P1-201ENST00000506694 209 ntBASIC2.54□□□□□ -2
MSH6P52701 AL359273.1-201ENST00000510918 627 ntBASIC2.54□□□□□ -2
MSH6P52701 RNA5SP82-201ENST00000516707 92 ntBASIC2.54□□□□□ -2
MSH6P52701 SNORA31.22-201ENST00000517204 135 ntBASIC2.54□□□□□ -2
MSH6P52701 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC2.54□□□□□ -2
MSH6P52701 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
MSH6P52701 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.54□□□□□ -2
MSH6P52701 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.54□□□□□ -2
MSH6P52701 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.54□□□□□ -2
MSH6P52701 AL391834.2-201ENST00000609982 546 ntBASIC2.54□□□□□ -2
MSH6P52701 uc_338.5-201ENST00000611839 155 ntBASIC2.54□□□□□ -2
MSH6P52701 AC107075.1-201ENST00000613695 314 ntBASIC2.54□□□□□ -2
MSH6P52701 AL590099.1-201ENST00000615276 138 ntBASIC2.54□□□□□ -2
MSH6P52701 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
MSH6P52701 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.54□□□□□ -2
MSH6P52701 RNA5SP37-201ENST00000365420 130 ntBASIC2.53□□□□□ -2
MSH6P52701 RPS3AP24-201ENST00000407896 734 ntBASIC2.53□□□□□ -2
MSH6P52701 HMGB3P2-201ENST00000411913 584 ntBASIC2.53□□□□□ -2
MSH6P52701 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC2.53□□□□□ -2
MSH6P52701 HMGN2P30-201ENST00000423237 256 ntBASIC2.53□□□□□ -2
MSH6P52701 TMEM167AP1-201ENST00000423409 219 ntBASIC2.53□□□□□ -2
MSH6P52701 MTND5P14-201ENST00000441481 1267 ntBASIC2.53□□□□□ -2
MSH6P52701 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.53□□□□□ -2
MSH6P52701 AL592447.1-201ENST00000447592 540 ntBASIC2.53□□□□□ -2
MSH6P52701 BX322784.1-201ENST00000455793 1077 ntBASIC2.53□□□□□ -2
MSH6P52701 RPL30P14-201ENST00000482744 348 ntBASIC2.53□□□□□ -2
MSH6P52701 WDR78-207ENST00000488333 613 ntTSL 3 BASIC2.53□□□□□ -2
MSH6P52701 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC2.53□□□□□ -2
MSH6P52701 RNA5SP480-201ENST00000516840 109 ntBASIC2.53□□□□□ -2
MSH6P52701 RNU6-528P-201ENST00000516926 100 ntBASIC2.53□□□□□ -2
MSH6P52701 CASP1P1-201ENST00000526345 212 ntBASIC2.53□□□□□ -2
MSH6P52701 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC2.53□□□□□ -2
MSH6P52701 RPS3AP23-202ENST00000574601 686 ntBASIC2.53□□□□□ -2
MSH6P52701 MIR4509-3-201ENST00000578671 94 ntBASIC2.53□□□□□ -2
MSH6P52701 MIR4509-2-201ENST00000583920 94 ntBASIC2.53□□□□□ -2
MSH6P52701 AP001269.3-201ENST00000588718 329 ntBASIC2.53□□□□□ -2
MSH6P52701 AP001429.1-201ENST00000602568 530 ntBASIC2.53□□□□□ -2
MSH6P52701 MTND3P19-201ENST00000603825 345 ntBASIC2.53□□□□□ -2
MSH6P52701 AC009314.1-201ENST00000603871 304 ntBASIC2.53□□□□□ -2
MSH6P52701 AL133507.1-201ENST00000605269 557 ntBASIC2.53□□□□□ -2
MSH6P52701 MIR502-201ENST00000606349 86 ntBASIC2.53□□□□□ -2
MSH6P52701 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC2.53□□□□□ -2
MSH6P52701 MIR4509-1-201ENST00000618224 94 ntBASIC2.53□□□□□ -2
MSH6P52701 MIR6130-201ENST00000619419 109 ntBASIC2.53□□□□□ -2
MSH6P52701 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
MSH6P52701 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC2.53□□□□□ -2.01
MSH6P52701 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
MSH6P52701 Y_RNA.234-201ENST00000364409 97 ntBASIC2.52□□□□□ -2.01
MSH6P52701 RNU6-1197P-201ENST00000391183 107 ntBASIC2.52□□□□□ -2.01
MSH6P52701 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
MSH6P52701 BX682237.1-201ENST00000415016 335 ntBASIC2.52□□□□□ -2.01
MSH6P52701 CCDC58P2-201ENST00000417131 366 ntBASIC2.52□□□□□ -2.01
MSH6P52701 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.52□□□□□ -2.01
MSH6P52701 AC234781.2-201ENST00000426370 994 ntBASIC2.52□□□□□ -2.01
MSH6P52701 HSFY7P-201ENST00000432672 318 ntBASIC2.52□□□□□ -2.01
MSH6P52701 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
MSH6P52701 HSFY8P-201ENST00000437934 318 ntBASIC2.52□□□□□ -2.01
MSH6P52701 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.52□□□□□ -2.01
MSH6P52701 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC2.52□□□□□ -2.01
MSH6P52701 Z73417.1-201ENST00000447373 778 ntBASIC2.52□□□□□ -2.01
MSH6P52701 HSFY5P-201ENST00000453726 309 ntBASIC2.52□□□□□ -2.01
MSH6P52701 AC005410.1-202ENST00000460347 485 ntBASIC2.52□□□□□ -2.01
MSH6P52701 TOMM22P6-201ENST00000465035 409 ntBASIC2.52□□□□□ -2.01
MSH6P52701 AC087373.1-201ENST00000524920 491 ntBASIC2.52□□□□□ -2.01
MSH6P52701 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
MSH6P52701 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms