Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 ACEA_U3.1-201ENST00000363057 217 ntBASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 Y_RNA.149-201ENST00000363558 117 ntBASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 Y_RNA.404-201ENST00000383978 102 ntBASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 RNU6-331P-201ENST00000384724 107 ntBASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 HSPE1P8-201ENST00000406997 288 ntBASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 AL691449.1-201ENST00000426570 421 ntBASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 AC006011.1-201ENST00000442758 349 ntBASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 AC108751.2-201ENST00000469993 231 ntBASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 AC084198.1-201ENST00000477747 402 ntBASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 LEF1-218ENST00000512172 598 ntTSL 2 BASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 Y_RNA.661-201ENST00000516003 99 ntBASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 BNIP3P16-201ENST00000589779 534 ntBASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 RNA5SP108-201ENST00000605921 117 ntBASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 MIR15A-201ENST00000607334 83 ntBASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 AL161423.1-201ENST00000613700 262 ntBASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 SDAD1P2-201ENST00000441308 2028 ntBASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 AL365440.1-201ENST00000436135 2167 ntBASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 MAPK10-349ENST00000641767 3661 ntBASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 AC032011.1-201ENST00000611703 1549 ntBASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 RNA5SP52-201ENST00000362448 134 ntBASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 RNU6-266P-201ENST00000364225 107 ntBASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 MIR1179-201ENST00000408703 91 ntBASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 RN7SKP167-201ENST00000411047 285 ntBASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 RPL36AP10-201ENST00000421785 322 ntBASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 AL160004.2-201ENST00000432935 350 ntBASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 AC073063.1-201ENST00000434352 607 ntBASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 AL353748.1-201ENST00000440753 474 ntBASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 AP000942.1-201ENST00000463969 747 ntBASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 DEFB109F-201ENST00000491870 277 ntBASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 SNORA74D-201ENST00000516404 141 ntBASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 AC008489.1-201ENST00000524271 483 ntBASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 COX6CP5-201ENST00000527162 228 ntBASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 AC025423.5-201ENST00000550230 219 ntBASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 AC006157.1-201ENST00000611750 366 ntBASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5.28□□□□□ -1.56
CCDC87Q9NVE4 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 AL672167.1-203ENST00000641299 2975 ntBASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 RNU1-115P-201ENST00000365329 160 ntBASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 RNU6-213P-201ENST00000384051 104 ntBASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 RNU6-574P-201ENST00000384265 107 ntBASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 RNY1P14-201ENST00000384426 108 ntBASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 MIR491-201ENST00000384877 84 ntBASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 MTATP6P4-201ENST00000427725 675 ntBASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 NOL8P1-201ENST00000508336 3529 ntBASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 AC110768.1-201ENST00000509222 400 ntBASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 TRAPPC2P2-201ENST00000517589 409 ntBASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 GNAI2P1-201ENST00000541815 315 ntBASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 AC034102.8-201ENST00000615146 484 ntBASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 AL391261.4-201ENST00000616012 481 ntBASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 AC007485.1-201ENST00000616755 206 ntBASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 AL162373.1-201ENST00000620433 407 ntBASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 AL353748.2-201ENST00000622148 471 ntBASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 Z69720.2-201ENST00000624755 279 ntBASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 EOGT-210ENST00000615922 1931 ntBASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
CCDC87Q9NVE4 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 AC009812.4-201ENST00000569134 1805 ntBASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 Y_RNA.428-201ENST00000384078 102 ntBASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms