Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC022861.1-201ENST00000522981 663 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
BRCA1P38398 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
BRCA1P38398 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
BRCA1P38398 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.22□□□□□ -2.05
BRCA1P38398 AC090615.1-201ENST00000577519 154 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 AL139344.1-201ENST00000605228 195 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 AL022578.1-201ENST00000439330 1433 ntBASIC2.21□□□□□ -2.05
BRCA1P38398 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.21□□□□□ -2.06
BRCA1P38398 MAPK10-266ENST00000641066 6555 ntBASIC2.21□□□□□ -2.06
BRCA1P38398 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.21□□□□□ -2.06
BRCA1P38398 RNU5A-1-201ENST00000362698 116 ntBASIC2.21□□□□□ -2.06
BRCA1P38398 RNU6-53P-201ENST00000365367 106 ntBASIC2.21□□□□□ -2.06
BRCA1P38398 RNU6-359P-201ENST00000365466 108 ntBASIC2.21□□□□□ -2.06
BRCA1P38398 AL590233.1-201ENST00000430017 456 ntBASIC2.21□□□□□ -2.06
BRCA1P38398 RPS15AP7-201ENST00000439294 405 ntBASIC2.21□□□□□ -2.06
BRCA1P38398 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.21□□□□□ -2.06
BRCA1P38398 BMI1P1-201ENST00000445879 941 ntBASIC2.21□□□□□ -2.06
BRCA1P38398 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC2.21□□□□□ -2.06
BRCA1P38398 AC092155.2-201ENST00000454675 477 ntBASIC2.21□□□□□ -2.06
BRCA1P38398 RPS15AP17-201ENST00000470598 390 ntBASIC2.21□□□□□ -2.06
BRCA1P38398 AC233702.1-201ENST00000482905 502 ntBASIC2.21□□□□□ -2.06
BRCA1P38398 AC079804.2-201ENST00000490376 200 ntBASIC2.21□□□□□ -2.06
BRCA1P38398 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC2.21□□□□□ -2.06
BRCA1P38398 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC2.21□□□□□ -2.06
BRCA1P38398 AC114322.1-201ENST00000506771 926 ntBASIC2.21□□□□□ -2.06
BRCA1P38398 AC022447.3-201ENST00000506865 495 ntBASIC2.21□□□□□ -2.06
BRCA1P38398 AC006499.2-201ENST00000513470 337 ntBASIC2.21□□□□□ -2.06
BRCA1P38398 GLYCAM1-201ENST00000546596 285 ntBASIC2.21□□□□□ -2.06
BRCA1P38398 PRELID2P1-201ENST00000552837 301 ntBASIC2.21□□□□□ -2.06
BRCA1P38398 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC2.21□□□□□ -2.06
BRCA1P38398 AC021749.1-201ENST00000604322 607 ntBASIC2.21□□□□□ -2.06
BRCA1P38398 NUTF2P8-201ENST00000604593 363 ntBASIC2.21□□□□□ -2.06
BRCA1P38398 AC004853.1-201ENST00000604902 698 ntBASIC2.21□□□□□ -2.06
BRCA1P38398 AC104985.3-201ENST00000623479 597 ntBASIC2.21□□□□□ -2.06
BRCA1P38398 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.21□□□□□ -2.06
BRCA1P38398 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.21□□□□□ -2.06
BRCA1P38398 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
BRCA1P38398 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
BRCA1P38398 SNORD65.1-201ENST00000390889 71 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
BRCA1P38398 AL079342.2-201ENST00000403367 482 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 RPL19P1-201ENST00000411635 428 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 AF274854.1-201ENST00000413236 615 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 RPL7L1P10-201ENST00000427790 463 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
BRCA1P38398 AC009238.1-201ENST00000442165 424 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 AC009237.6-201ENST00000446969 424 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 AL592447.1-201ENST00000447592 540 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 ARPC3P5-201ENST00000448802 534 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC2.2□□□□□ -2.06
BRCA1P38398 RNU7-59P-201ENST00000459101 61 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 AC147055.4-201ENST00000504399 745 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC2.2□□□□□ -2.06
BRCA1P38398 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.2□□□□□ -2.06
BRCA1P38398 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
BRCA1P38398 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
BRCA1P38398 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC2.2□□□□□ -2.06
BRCA1P38398 HMGB1P14-201ENST00000557424 591 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.2□□□□□ -2.06
BRCA1P38398 AL158211.2-201ENST00000607282 395 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.2□□□□□ -2.06
BRCA1P38398 AC126544.2-201ENST00000625174 749 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 AP000553.5-201ENST00000641933 54 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 DDX10P1-201ENST00000448545 1933 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
BRCA1P38398 TAS2R15P-201ENST00000390674 928 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 CCNG1P1-201ENST00000406783 885 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 AC019070.1-201ENST00000415008 1024 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 EIF1AXP1-201ENST00000419267 435 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 AC098614.2-201ENST00000426040 255 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 MICF-203ENST00000432679 129 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC2.2□□□□□ -2.06
BRCA1P38398 PIGFP3-201ENST00000441918 722 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 MTCO2P25-201ENST00000447065 681 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC2.2□□□□□ -2.06
BRCA1P38398 AC104435.1-201ENST00000483483 166 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 HMGN1P28-201ENST00000521340 364 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.2□□□□□ -2.06
BRCA1P38398 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
BRCA1P38398 AC005498.1-201ENST00000592125 465 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 AL049779.4-201ENST00000604500 156 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 AP000676.3-201ENST00000623299 569 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.2□□□□□ -2.06
BRCA1P38398 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.2□□□□□ -2.06
BRCA1P38398 AC005336.3-201ENST00000623833 2679 ntBASIC2.19□□□□□ -2.06
BRCA1P38398 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.19□□□□□ -2.06
BRCA1P38398 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.19□□□□□ -2.06
BRCA1P38398 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.19□□□□□ -2.06
BRCA1P38398 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC2.19□□□□□ -2.06
BRCA1P38398 RNU6-432P-201ENST00000384196 109 ntBASIC2.19□□□□□ -2.06
BRCA1P38398 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.19□□□□□ -2.06
BRCA1P38398 AC008850.1-201ENST00000427546 362 ntBASIC2.19□□□□□ -2.06
BRCA1P38398 TRBV26OR9-2-201ENST00000432077 293 ntBASIC2.19□□□□□ -2.06
BRCA1P38398 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC2.19□□□□□ -2.06
BRCA1P38398 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.19□□□□□ -2.06
BRCA1P38398 Z96811.1-201ENST00000445880 108 ntBASIC2.19□□□□□ -2.06
BRCA1P38398 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.19□□□□□ -2.06
BRCA1P38398 AC087588.1-201ENST00000462203 316 ntBASIC2.19□□□□□ -2.06
BRCA1P38398 GZMAP1-201ENST00000503054 631 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms