Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
DEPDC4Q8N2C3 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.05□□□□□ -1.6
DEPDC4Q8N2C3 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC5.05□□□□□ -1.6
DEPDC4Q8N2C3 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC5.05□□□□□ -1.6
DEPDC4Q8N2C3 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC5.05□□□□□ -1.6
DEPDC4Q8N2C3 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
DEPDC4Q8N2C3 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 AP001148.1-201ENST00000624124 2359 ntBASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 RNU6-1301P-201ENST00000362724 104 ntBASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 RNU6-1266P-201ENST00000362794 105 ntBASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 Y_RNA.297-201ENST00000364950 91 ntBASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 SNORD63-201ENST00000384262 68 ntBASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 MIR105-2-201ENST00000385083 81 ntBASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 AL079342.1-201ENST00000401460 267 ntBASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 CTSL3P-202ENST00000412179 788 ntBASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 RAB9AP3-201ENST00000412737 573 ntBASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 AL139156.1-201ENST00000412785 841 ntBASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 RAB9AP1-201ENST00000449393 573 ntBASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 OR7H2P-201ENST00000513483 306 ntBASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 RNU6-1282P-201ENST00000516735 96 ntBASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 RNU6-789P-201ENST00000517105 102 ntBASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 RNU6-1073P-201ENST00000517182 106 ntBASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 LINC00933-203ENST00000559812 219 ntBASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 AC010547.6-201ENST00000571789 193 ntBASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 SNORD95-201ENST00000579879 68 ntBASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 MIR6719-201ENST00000622428 87 ntBASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 AC009541.1-201ENST00000438279 2662 ntBASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
DEPDC4Q8N2C3 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 AC015813.6-201ENST00000624409 5808 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 OR13C1P-202ENST00000641378 2919 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 RNA5SP46-201ENST00000362370 120 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 Y_RNA.200-201ENST00000364018 102 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 RNU6-968P-201ENST00000384076 107 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 RNU6-140P-201ENST00000384566 108 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 MRPL53P1-201ENST00000414323 319 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 RPS6P12-201ENST00000432491 726 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 AC104332.1-201ENST00000440471 797 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 AL392103.1-201ENST00000447000 198 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 U8.22-201ENST00000459141 133 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 RPL23AP75-201ENST00000491601 451 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 RPL30P5-201ENST00000494923 336 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 AC026784.1-201ENST00000507986 352 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 RNU6-1183P-201ENST00000517054 60 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 AC021678.3-201ENST00000517893 476 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 AP006245.1-201ENST00000522549 120 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 AL049872.1-201ENST00000556323 322 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 ZNF192P1-203ENST00000565888 810 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 MIR4489-201ENST00000578869 62 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 MIR4505-201ENST00000582238 73 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 RPL23AP88-201ENST00000605759 454 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 AC211433.2-201ENST00000608433 387 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 RNA5SP440-201ENST00000612665 119 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 AC112200.1-201ENST00000625015 234 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 BMS1P21-201ENST00000634565 365 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 OFD1P6Y-202ENST00000451061 2724 ntBASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
DEPDC4Q8N2C3 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
DEPDC4Q8N2C3 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
DEPDC4Q8N2C3 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
DEPDC4Q8N2C3 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.02□□□□□ -1.61
DEPDC4Q8N2C3 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
DEPDC4Q8N2C3 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
DEPDC4Q8N2C3 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC5.02□□□□□ -1.61
DEPDC4Q8N2C3 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.02□□□□□ -1.61
DEPDC4Q8N2C3 Y_RNA.65-201ENST00000362846 100 ntBASIC5.02□□□□□ -1.61
DEPDC4Q8N2C3 RNU1-19P-201ENST00000363306 165 ntBASIC5.02□□□□□ -1.61
DEPDC4Q8N2C3 Y_RNA.274-201ENST00000364714 101 ntBASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms