Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RNU6-847P-201ENST00000411115 108 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 UBE2V1P13-201ENST00000436983 439 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 HMGB1P12-201ENST00000438594 598 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 AL500522.2-201ENST00000448562 343 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.16□□□□□ -1.74
USP39Q53GS9 HMGB3P30-201ENST00000457863 606 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 RPL37P6-202ENST00000464216 403 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 PLGLA-201ENST00000465668 449 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.16□□□□□ -1.74
USP39Q53GS9 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC4.16□□□□□ -1.74
USP39Q53GS9 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.16□□□□□ -1.74
USP39Q53GS9 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.16□□□□□ -1.74
USP39Q53GS9 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 AC090281.1-201ENST00000523019 276 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 AC024224.1-201ENST00000538284 609 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.16□□□□□ -1.74
USP39Q53GS9 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.16□□□□□ -1.74
USP39Q53GS9 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC4.16□□□□□ -1.74
USP39Q53GS9 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.16□□□□□ -1.74
USP39Q53GS9 AC010653.1-201ENST00000571108 881 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 AC090615.1-201ENST00000577519 154 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.16□□□□□ -1.74
USP39Q53GS9 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC4.16□□□□□ -1.74
USP39Q53GS9 AC012409.4-201ENST00000612923 249 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 AL162373.1-201ENST00000620433 407 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 AL354798.1-201ENST00000622505 329 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 AC006065.5-201ENST00000623427 349 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 AL049641.1-201ENST00000441055 1948 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
USP39Q53GS9 EFTUD1P2-201ENST00000514817 1603 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
USP39Q53GS9 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
USP39Q53GS9 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.16□□□□□ -1.74
USP39Q53GS9 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
USP39Q53GS9 MARK2P15-201ENST00000432204 2186 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.16□□□□□ -1.74
USP39Q53GS9 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.16□□□□□ -1.74
USP39Q53GS9 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.74
USP39Q53GS9 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
USP39Q53GS9 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC4.15□□□□□ -1.74
USP39Q53GS9 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
USP39Q53GS9 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.15□□□□□ -1.74
USP39Q53GS9 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.74
USP39Q53GS9 MIR208A-201ENST00000362287 71 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 SNORA60-201ENST00000362396 134 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 RNU6-641P-201ENST00000384006 107 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 RNU6-1293P-201ENST00000384077 107 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 Y_RNA.463-201ENST00000384271 102 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 AL603908.1-201ENST00000406098 201 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 HSPE1P12-201ENST00000412576 301 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.15□□□□□ -1.75
USP39Q53GS9 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC4.15□□□□□ -1.75
USP39Q53GS9 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC4.15□□□□□ -1.75
USP39Q53GS9 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC4.15□□□□□ -1.75
USP39Q53GS9 AL669831.1-202ENST00000428504 417 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 YME1L1P1-201ENST00000429435 297 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 RAC1P7-201ENST00000445367 377 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 RPL12P25-201ENST00000455592 494 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.15□□□□□ -1.75
USP39Q53GS9 RPL21P93-201ENST00000480465 489 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 AL139099.1-201ENST00000497398 403 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 AC108145.1-201ENST00000503770 153 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 AC093767.1-201ENST00000504523 156 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 SNORA25.10-201ENST00000515926 124 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 RNA5SP154-201ENST00000516193 111 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 RNA5SP309-201ENST00000516670 106 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.15□□□□□ -1.75
USP39Q53GS9 AL137161.1-201ENST00000532231 390 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 AP000763.2-201ENST00000540641 163 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.15□□□□□ -1.75
USP39Q53GS9 AC138761.3-201ENST00000579993 334 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC4.15□□□□□ -1.75
USP39Q53GS9 AC024619.4-201ENST00000580924 316 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 MIR432-201ENST00000606207 94 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4.15□□□□□ -1.75
USP39Q53GS9 SNORA51-201ENST00000606420 132 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 FAM157A-202ENST00000615155 405 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 RNU6-156P-201ENST00000621869 107 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 AL669831.3-213ENST00000636676 183 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 AC012442.3-202ENST00000636742 206 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.15□□□□□ -1.75
USP39Q53GS9 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
USP39Q53GS9 AC116667.1-201ENST00000604855 2072 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 Z82217.1-201ENST00000625157 8149 ntBASIC4.15□□□□□ -1.75
USP39Q53GS9 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
USP39Q53GS9 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
USP39Q53GS9 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.14□□□□□ -1.75
USP39Q53GS9 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC4.14□□□□□ -1.75
USP39Q53GS9 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
USP39Q53GS9 AC011266.1-201ENST00000624119 3569 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 Y_RNA.153-201ENST00000363615 91 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 RNU6-379P-201ENST00000363813 104 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 Y_RNA.176-201ENST00000363815 109 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 RNU6-82P-201ENST00000363970 107 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 Y_RNA.252-201ENST00000364556 101 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 RNA5SP167-201ENST00000365461 116 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
USP39Q53GS9 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.14□□□□□ -1.75
USP39Q53GS9 SNORD116-11-201ENST00000383882 92 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 RNU6-1226P-201ENST00000384317 107 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms