Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.37□□□□□ -2.19
CHD3Q12873 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC1.37□□□□□ -2.19
CHD3Q12873 Y_RNA.675-201ENST00000516389 149 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 RNU6-798P-201ENST00000516912 103 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC1.37□□□□□ -2.19
CHD3Q12873 MTCYBP23-201ENST00000558717 1102 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC1.37□□□□□ -2.19
CHD3Q12873 AGGF1P5-201ENST00000567900 919 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 AC068135.2-201ENST00000569293 1028 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 AC012254.4-201ENST00000588843 273 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 AC096586.1-201ENST00000610267 561 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC1.37□□□□□ -2.19
CHD3Q12873 AL356585.4-201ENST00000623078 1229 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
CHD3Q12873 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
CHD3Q12873 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
CHD3Q12873 SEC63P2-201ENST00000503863 1939 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 MIR147B-201ENST00000390185 80 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 RNU2-47P-201ENST00000410649 186 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 VN1R36P-201ENST00000414936 291 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.37□□□□□ -2.19
CHD3Q12873 AL512637.2-201ENST00000431287 1256 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 AC004383.1-201ENST00000438135 289 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 AC093155.1-201ENST00000440164 826 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 RPL12P25-201ENST00000455592 494 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 MTCO3P2-201ENST00000457365 171 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 RNU6-420P-201ENST00000458780 107 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC1.37□□□□□ -2.19
CHD3Q12873 AC107626.1-201ENST00000471084 183 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 AC092991.1-201ENST00000477176 376 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 RPL31P60-201ENST00000478450 367 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 NAA50-206ENST00000493454 964 ntTSL 2 BASIC1.37□□□□□ -2.19
CHD3Q12873 SSR3-208ENST00000496050 579 ntTSL 4 BASIC1.37□□□□□ -2.19
CHD3Q12873 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC1.37□□□□□ -2.19
CHD3Q12873 RNU6-488P-201ENST00000515918 99 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 AC084851.1-201ENST00000529105 249 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 AC135279.1-201ENST00000543493 504 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC1.37□□□□□ -2.19
CHD3Q12873 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.37□□□□□ -2.19
CHD3Q12873 MIR4529-201ENST00000578110 78 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC1.37□□□□□ -2.19
CHD3Q12873 BNIP3P24-201ENST00000593398 557 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 AL359740.1-201ENST00000624340 592 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 MTND4P27-201ENST00000450813 1354 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
CHD3Q12873 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.36□□□□□ -2.19
CHD3Q12873 Y_RNA.327-201ENST00000365201 102 ntBASIC1.36□□□□□ -2.19
CHD3Q12873 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC1.36□□□□□ -2.19
CHD3Q12873 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
CHD3Q12873 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC1.36□□□□□ -2.19
CHD3Q12873 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC1.36□□□□□ -2.19
CHD3Q12873 HGF-207ENST00000453018 721 ntTSL 3 BASIC1.36□□□□□ -2.19
CHD3Q12873 Z82190.1-201ENST00000454534 490 ntBASIC1.36□□□□□ -2.19
CHD3Q12873 BX248409.1-201ENST00000455497 255 ntBASIC1.36□□□□□ -2.19
CHD3Q12873 AL359385.1-201ENST00000456509 365 ntBASIC1.36□□□□□ -2.19
CHD3Q12873 CABYRP1-201ENST00000465493 1045 ntBASIC1.36□□□□□ -2.19
CHD3Q12873 AL121769.1-201ENST00000469473 401 ntBASIC1.36□□□□□ -2.19
CHD3Q12873 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC1.36□□□□□ -2.19
CHD3Q12873 BZW1P2-201ENST00000473537 826 ntBASIC1.36□□□□□ -2.19
CHD3Q12873 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC1.36□□□□□ -2.19
CHD3Q12873 MTCO3P42-201ENST00000509488 518 ntBASIC1.36□□□□□ -2.19
CHD3Q12873 MTCO3P39-201ENST00000514812 518 ntBASIC1.36□□□□□ -2.19
CHD3Q12873 RNU2-44P-201ENST00000516795 194 ntBASIC1.36□□□□□ -2.19
CHD3Q12873 SNORA31.18-201ENST00000517043 134 ntBASIC1.36□□□□□ -2.19
CHD3Q12873 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC1.36□□□□□ -2.19
CHD3Q12873 AP003066.2-201ENST00000529375 555 ntBASIC1.36□□□□□ -2.19
CHD3Q12873 AC011604.1-201ENST00000545978 196 ntBASIC1.36□□□□□ -2.19
CHD3Q12873 BPTFP1-201ENST00000579209 492 ntBASIC1.36□□□□□ -2.19
CHD3Q12873 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
CHD3Q12873 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC1.36□□□□□ -2.19
CHD3Q12873 AL163051.2-201ENST00000618976 735 ntBASIC1.36□□□□□ -2.19
CHD3Q12873 AC073592.7-201ENST00000623659 507 ntBASIC1.36□□□□□ -2.19
CHD3Q12873 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC1.36□□□□□ -2.19
CHD3Q12873 AC090617.9-201ENST00000623751 147 ntBASIC1.36□□□□□ -2.19
CHD3Q12873 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
CHD3Q12873 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.36□□□□□ -2.19
CHD3Q12873 CR848007.1-201ENST00000442354 1699 ntBASIC1.36□□□□□ -2.19
CHD3Q12873 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
CHD3Q12873 RNU4-51P-201ENST00000364206 140 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 SNORA16.1-201ENST00000364597 132 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 BX510359.4-201ENST00000423750 193 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC1.35□□□□□ -2.19
CHD3Q12873 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC1.35□□□□□ -2.19
CHD3Q12873 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC1.35□□□□□ -2.19
CHD3Q12873 TAAR7P-201ENST00000436141 242 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.35□□□□□ -2.19
CHD3Q12873 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC1.35□□□□□ -2.19
CHD3Q12873 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC1.35□□□□□ -2.19
CHD3Q12873 AL353691.1-201ENST00000451332 387 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 ATP5J2P3-201ENST00000451550 258 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC1.35□□□□□ -2.19
CHD3Q12873 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.35□□□□□ -2.19
CHD3Q12873 AC048346.1-201ENST00000510247 144 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 AP005902.1-201ENST00000521358 186 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
CHD3Q12873 MIR3122-201ENST00000577243 73 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 ABBA01006766.1-201ENST00000584728 294 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 AC025588.4-201ENST00000615802 908 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 U6.101-201ENST00000637707 76 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 131.9 ms