Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC007363.1-201ENST00000604736 620 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 AC025594.3-201ENST00000613068 790 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 AC007998.5-201ENST00000622938 237 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 MIR3974-201ENST00000637126 96 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.28□□□□□ -1.88
VPS28Q9UK41 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VPS28Q9UK41 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
VPS28Q9UK41 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS28Q9UK41 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.28□□□□□ -1.89
VPS28Q9UK41 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VPS28Q9UK41 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS28Q9UK41 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS28Q9UK41 RNU5E-1-201ENST00000362477 120 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 SMIM11P1-201ENST00000369586 178 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 RNU6-14P-201ENST00000384630 106 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 RPL23AP32-201ENST00000395315 459 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 RNU2-68P-201ENST00000410878 191 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS28Q9UK41 ELOCP4-201ENST00000420090 333 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 HMGN2P30-201ENST00000423237 256 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
VPS28Q9UK41 AC009969.1-201ENST00000438726 172 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 PGBD4P3-201ENST00000440731 581 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 USP9YP15-201ENST00000442391 422 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 MTND6P13-201ENST00000443510 523 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.27□□□□□ -1.89
VPS28Q9UK41 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.27□□□□□ -1.89
VPS28Q9UK41 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.27□□□□□ -1.89
VPS28Q9UK41 RPS27AP8-201ENST00000452665 445 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 FABP5P15-201ENST00000453566 214 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS28Q9UK41 RNA5SP269-201ENST00000459032 137 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 snoU109.1-201ENST00000459339 135 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 MRPS17P3-201ENST00000465453 385 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS28Q9UK41 RPS27P26-201ENST00000494583 239 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 AC010486.3-201ENST00000511602 785 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 RNA5SP165-201ENST00000517142 115 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS28Q9UK41 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC3.27□□□□□ -1.89
VPS28Q9UK41 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.27□□□□□ -1.89
VPS28Q9UK41 AL359212.1-201ENST00000556608 614 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 HMGN2P15-201ENST00000585707 270 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 AC104763.2-201ENST00000604179 382 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 MTND4LP5-201ENST00000605152 292 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 AL451064.1-201ENST00000607718 471 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 AC008498.1-201ENST00000613012 531 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 uc_338.25-201ENST00000613756 156 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 AC008250.2-201ENST00000615261 205 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 MIR8057-201ENST00000620957 69 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 AC099506.2-201ENST00000623074 221 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 AC026422.1-201ENST00000623961 452 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 AL603839.4-201ENST00000624658 1005 ntBASIC3.27□□□□□ -1.89
VPS28Q9UK41 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.27□□□□□ -1.89
VPS28Q9UK41 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
VPS28Q9UK41 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS28Q9UK41 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.27□□□□□ -1.89
VPS28Q9UK41 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS28Q9UK41 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS28Q9UK41 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
VPS28Q9UK41 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS28Q9UK41 SNORD56.2-201ENST00000363242 71 ntBASIC3.26□□□□□ -1.89
VPS28Q9UK41 U3.6-201ENST00000363622 211 ntBASIC3.26□□□□□ -1.89
VPS28Q9UK41 RNU6-960P-201ENST00000364056 120 ntBASIC3.26□□□□□ -1.89
VPS28Q9UK41 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
VPS28Q9UK41 MIR1289-1-201ENST00000408836 144 ntBASIC3.26□□□□□ -1.89
VPS28Q9UK41 RPS3AP3-201ENST00000411933 242 ntBASIC3.26□□□□□ -1.89
VPS28Q9UK41 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS28Q9UK41 ATG3P1-201ENST00000419507 911 ntBASIC3.26□□□□□ -1.89
VPS28Q9UK41 AC090960.1-201ENST00000421072 306 ntBASIC3.26□□□□□ -1.89
VPS28Q9UK41 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS28Q9UK41 RPL36AP53-201ENST00000432891 316 ntBASIC3.26□□□□□ -1.89
VPS28Q9UK41 MTND4P25-201ENST00000441039 533 ntBASIC3.26□□□□□ -1.89
VPS28Q9UK41 AC091179.1-201ENST00000461606 579 ntBASIC3.26□□□□□ -1.89
VPS28Q9UK41 RPL36AP51-201ENST00000487216 318 ntBASIC3.26□□□□□ -1.89
VPS28Q9UK41 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS28Q9UK41 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS28Q9UK41 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS28Q9UK41 AC119751.5-201ENST00000514077 770 ntBASIC3.26□□□□□ -1.89
VPS28Q9UK41 RNA5SP217-201ENST00000515959 91 ntBASIC3.26□□□□□ -1.89
VPS28Q9UK41 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.26□□□□□ -1.89
VPS28Q9UK41 SUB1P1-201ENST00000524415 382 ntBASIC3.26□□□□□ -1.89
VPS28Q9UK41 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
VPS28Q9UK41 MIR3200-201ENST00000580767 85 ntBASIC3.26□□□□□ -1.89
VPS28Q9UK41 MIR3682-201ENST00000581338 84 ntBASIC3.26□□□□□ -1.89
VPS28Q9UK41 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS28Q9UK41 AL365204.3-201ENST00000612448 685 ntBASIC3.26□□□□□ -1.89
VPS28Q9UK41 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.26□□□□□ -1.89
VPS28Q9UK41 AC138932.5-201ENST00000617759 563 ntBASIC3.26□□□□□ -1.89
VPS28Q9UK41 AC091953.5-201ENST00000622919 233 ntBASIC3.26□□□□□ -1.89
VPS28Q9UK41 AC091903.1-201ENST00000624322 454 ntBASIC3.26□□□□□ -1.89
VPS28Q9UK41 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
VPS28Q9UK41 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
VPS28Q9UK41 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.25□□□□□ -1.89
VPS28Q9UK41 FAM35CP-201ENST00000554755 2470 ntBASIC3.25□□□□□ -1.89
VPS28Q9UK41 RNA5SP374-201ENST00000362939 125 ntBASIC3.25□□□□□ -1.89
VPS28Q9UK41 MIR483-201ENST00000385070 76 ntBASIC3.25□□□□□ -1.89
VPS28Q9UK41 SNORA40.3-201ENST00000390964 122 ntBASIC3.25□□□□□ -1.89
VPS28Q9UK41 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC3.25□□□□□ -1.89
VPS28Q9UK41 AC007283.2-201ENST00000424739 197 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms