Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC013476.2-201ENST00000614456 459 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 UCA1.1-201ENST00000620952 75 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
CCDC54Q8NEL0 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 RNU6-500P-201ENST00000362349 107 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 RNU1-105P-201ENST00000363470 161 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 RNU6-217P-201ENST00000384164 104 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 RNU6-432P-201ENST00000384196 109 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 RNU6-1035P-201ENST00000384477 107 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AL389915.1-201ENST00000422463 466 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 UBE2V1P13-201ENST00000436983 439 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 DDX3P2-201ENST00000446138 111 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 IGKV1OR-3-201ENST00000446944 348 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 MTCO1P42-201ENST00000457379 726 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 RNU6-420P-201ENST00000458780 107 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AC133134.1-201ENST00000466800 359 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 RPL31P41-201ENST00000477967 372 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AC113155.1-201ENST00000511141 769 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 RNU6-1282P-201ENST00000516735 96 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 RNU6-64P-201ENST00000517119 105 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 ZNF321P-202ENST00000550843 495 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 TRAV28-201ENST00000557548 323 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AC022022.2-201ENST00000602989 360 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AC093424.1-201ENST00000604999 338 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AC091965.4-201ENST00000607691 587 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AC034229.4-201ENST00000607861 441 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AL137847.3-201ENST00000611521 109 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 MIR6798-201ENST00000612887 67 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AL159972.1-201ENST00000625150 448 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 DDX10P1-201ENST00000448545 1933 ntBASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.26□□□□□ -2.05
CCDC54Q8NEL0 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 TPTE2P4-201ENST00000258589 1605 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 FTLP6-201ENST00000355274 422 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 RPS20P2-201ENST00000402520 389 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 RNA5SP181-201ENST00000410246 98 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 RN7SKP27-201ENST00000410684 333 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 HMGB1P11-201ENST00000413899 637 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 HIGD1AP15-201ENST00000416198 280 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 USP9YP26-201ENST00000421008 661 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AL354941.1-201ENST00000438600 464 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AL008629.1-201ENST00000438615 184 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 CYCSP32-201ENST00000440548 321 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 PIGFP3-201ENST00000441918 722 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AL591719.1-201ENST00000444669 744 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 EPS15P1-201ENST00000448836 336 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AC011753.1-201ENST00000451001 220 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AC008481.1-201ENST00000463278 396 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 RPS29P20-201ENST00000489592 171 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AC096725.1-201ENST00000514266 313 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 RNA5SP402-201ENST00000517148 110 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AP003461.1-201ENST00000528866 78 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AC007115.1-201ENST00000546853 234 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AC123904.2-201ENST00000548059 300 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms