Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Prpf40aQ9R1C7 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Prpf40aQ9R1C7 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Prpf40aQ9R1C7 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Prpf40aQ9R1C7 Gm25016-201ENSMUST00000158399 131 ntBASIC17.88■□□□□ 0.45
Prpf40aQ9R1C7 Gm23634-201ENSMUST00000175071 91 ntBASIC17.88■□□□□ 0.45
Prpf40aQ9R1C7 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Prpf40aQ9R1C7 Gm29707-201ENSMUST00000196325 491 ntBASIC17.88■□□□□ 0.45
Prpf40aQ9R1C7 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Prpf40aQ9R1C7 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Prpf40aQ9R1C7 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Prpf40aQ9R1C7 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Prpf40aQ9R1C7 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Prpf40aQ9R1C7 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
Prpf40aQ9R1C7 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Prpf40aQ9R1C7 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Prpf40aQ9R1C7 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Prpf40aQ9R1C7 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
Prpf40aQ9R1C7 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Prpf40aQ9R1C7 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 5830487J09Rik-201ENSMUST00000198600 1256 ntTSL 5 BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Gm5587-201ENSMUST00000206270 674 ntBASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Prpf40aQ9R1C7 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Gm18421-201ENSMUST00000204122 625 ntBASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Prpf40aQ9R1C7 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Prpf40aQ9R1C7 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Prpf40aQ9R1C7 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
Prpf40aQ9R1C7 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Prpf40aQ9R1C7 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
Prpf40aQ9R1C7 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
Prpf40aQ9R1C7 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
Prpf40aQ9R1C7 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Prpf40aQ9R1C7 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
Prpf40aQ9R1C7 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Prpf40aQ9R1C7 AA414768-201ENSMUST00000121924 1257 ntBASIC17.85■□□□□ 0.45
Prpf40aQ9R1C7 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC17.85■□□□□ 0.45
Prpf40aQ9R1C7 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Prpf40aQ9R1C7 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Prpf40aQ9R1C7 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Prpf40aQ9R1C7 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Prpf40aQ9R1C7 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Prpf40aQ9R1C7 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Prpf40aQ9R1C7 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Prpf40aQ9R1C7 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC17.85■□□□□ 0.45
Prpf40aQ9R1C7 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Gm6728-201ENSMUST00000178117 1065 ntBASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms