Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Vps28Q9D1C8 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Vps28Q9D1C8 Gm36858-201ENSMUST00000194501 2391 ntBASIC16.63■□□□□ 0.25
Vps28Q9D1C8 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps28Q9D1C8 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Vps28Q9D1C8 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps28Q9D1C8 Gm28033-201ENSMUST00000184224 96 ntBASIC16.63■□□□□ 0.25
Vps28Q9D1C8 Gm44430-201ENSMUST00000203376 995 ntBASIC16.63■□□□□ 0.25
Vps28Q9D1C8 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps28Q9D1C8 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Vps28Q9D1C8 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Vps28Q9D1C8 Slc35b2-202ENSMUST00000223987 1766 ntBASIC16.63■□□□□ 0.25
Vps28Q9D1C8 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Vps28Q9D1C8 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps28Q9D1C8 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps28Q9D1C8 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps28Q9D1C8 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps28Q9D1C8 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Vps28Q9D1C8 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vps28Q9D1C8 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vps28Q9D1C8 AC069562.2-201ENSMUST00000224644 2146 ntBASIC16.61■□□□□ 0.25
Vps28Q9D1C8 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Vps28Q9D1C8 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vps28Q9D1C8 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vps28Q9D1C8 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vps28Q9D1C8 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
Vps28Q9D1C8 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
Vps28Q9D1C8 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC16.61■□□□□ 0.25
Vps28Q9D1C8 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Vps28Q9D1C8 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vps28Q9D1C8 AC159205.3-201ENSMUST00000224614 874 ntBASIC16.61■□□□□ 0.25
Vps28Q9D1C8 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vps28Q9D1C8 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vps28Q9D1C8 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vps28Q9D1C8 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Vps28Q9D1C8 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vps28Q9D1C8 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vps28Q9D1C8 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Vps28Q9D1C8 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Vps28Q9D1C8 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Vps28Q9D1C8 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Vps28Q9D1C8 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vps28Q9D1C8 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
Vps28Q9D1C8 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vps28Q9D1C8 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vps28Q9D1C8 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC16.59■□□□□ 0.25
Vps28Q9D1C8 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Vps28Q9D1C8 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC16.59■□□□□ 0.25
Vps28Q9D1C8 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vps28Q9D1C8 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC16.59■□□□□ 0.25
Vps28Q9D1C8 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Vps28Q9D1C8 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vps28Q9D1C8 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Vps28Q9D1C8 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC16.59■□□□□ 0.25
Vps28Q9D1C8 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC16.59■□□□□ 0.25
Vps28Q9D1C8 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms