Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC18.53■□□□□ 0.56
Trim11Q99PQ2 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim11Q99PQ2 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim11Q99PQ2 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim11Q99PQ2 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim11Q99PQ2 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trim11Q99PQ2 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim11Q99PQ2 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim11Q99PQ2 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim11Q99PQ2 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC18.52■□□□□ 0.56
Trim11Q99PQ2 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim11Q99PQ2 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
Trim11Q99PQ2 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC18.52■□□□□ 0.56
Trim11Q99PQ2 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trim11Q99PQ2 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trim11Q99PQ2 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
Trim11Q99PQ2 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC18.52■□□□□ 0.56
Trim11Q99PQ2 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC18.52■□□□□ 0.56
Trim11Q99PQ2 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC18.52■□□□□ 0.56
Trim11Q99PQ2 Gm15442-201ENSMUST00000117905 1527 ntBASIC18.52■□□□□ 0.56
Trim11Q99PQ2 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trim11Q99PQ2 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim11Q99PQ2 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC18.52■□□□□ 0.55
Trim11Q99PQ2 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
Trim11Q99PQ2 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trim11Q99PQ2 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trim11Q99PQ2 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trim11Q99PQ2 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC18.51■□□□□ 0.55
Trim11Q99PQ2 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim11Q99PQ2 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
Trim11Q99PQ2 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim11Q99PQ2 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC18.51■□□□□ 0.55
Trim11Q99PQ2 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC18.51■□□□□ 0.55
Trim11Q99PQ2 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim11Q99PQ2 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim11Q99PQ2 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim11Q99PQ2 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim11Q99PQ2 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
Trim11Q99PQ2 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trim11Q99PQ2 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC18.51■□□□□ 0.55
Trim11Q99PQ2 Gm22697-201ENSMUST00000175194 63 ntBASIC18.51■□□□□ 0.55
Trim11Q99PQ2 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim11Q99PQ2 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Trim11Q99PQ2 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim11Q99PQ2 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC18.51■□□□□ 0.55
Trim11Q99PQ2 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim11Q99PQ2 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim11Q99PQ2 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
Trim11Q99PQ2 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim11Q99PQ2 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim11Q99PQ2 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trim11Q99PQ2 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim11Q99PQ2 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Gm32996-201ENSMUST00000199828 1447 ntBASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Gm18101-201ENSMUST00000215769 548 ntBASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Dancr-204ENSMUST00000132389 2347 ntBASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Trim11Q99PQ2 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim11Q99PQ2 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC18.49■□□□□ 0.55
Trim11Q99PQ2 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim11Q99PQ2 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim11Q99PQ2 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC18.49■□□□□ 0.55
Trim11Q99PQ2 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Trim11Q99PQ2 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim11Q99PQ2 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim11Q99PQ2 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
Trim11Q99PQ2 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim11Q99PQ2 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Trim11Q99PQ2 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim11Q99PQ2 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC18.49■□□□□ 0.55
Trim11Q99PQ2 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim11Q99PQ2 Gm37722-201ENSMUST00000193757 208 ntBASIC18.49■□□□□ 0.55
Trim11Q99PQ2 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim11Q99PQ2 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Trim11Q99PQ2 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Trim11Q99PQ2 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Trim11Q99PQ2 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim11Q99PQ2 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC18.49■□□□□ 0.55
Trim11Q99PQ2 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim11Q99PQ2 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC18.48■□□□□ 0.55
Trim11Q99PQ2 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC18.48■□□□□ 0.55
Trim11Q99PQ2 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms