Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Msh4Q99MT2 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
Msh4Q99MT2 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Msh4Q99MT2 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Msh4Q99MT2 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Msh4Q99MT2 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Msh4Q99MT2 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
Msh4Q99MT2 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Msh4Q99MT2 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Msh4Q99MT2 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Msh4Q99MT2 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Msh4Q99MT2 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
Msh4Q99MT2 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Msh4Q99MT2 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Msh4Q99MT2 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Msh4Q99MT2 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC15.84■□□□□ 0.13
Msh4Q99MT2 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC15.84■□□□□ 0.13
Msh4Q99MT2 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC15.84■□□□□ 0.13
Msh4Q99MT2 AC107711.5-202ENSMUST00000226429 702 ntBASIC15.84■□□□□ 0.13
Msh4Q99MT2 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Msh4Q99MT2 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Msh4Q99MT2 Gm7367-201ENSMUST00000057611 492 ntBASIC15.84■□□□□ 0.13
Msh4Q99MT2 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Msh4Q99MT2 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Msh4Q99MT2 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Msh4Q99MT2 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Msh4Q99MT2 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Msh4Q99MT2 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Msh4Q99MT2 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Msh4Q99MT2 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
Msh4Q99MT2 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Msh4Q99MT2 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC15.84■□□□□ 0.13
Msh4Q99MT2 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Msh4Q99MT2 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Msh4Q99MT2 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
Msh4Q99MT2 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Msh4Q99MT2 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Msh4Q99MT2 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
Msh4Q99MT2 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Msh4Q99MT2 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Msh4Q99MT2 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC15.83■□□□□ 0.12
Msh4Q99MT2 Gm37722-201ENSMUST00000193757 208 ntBASIC15.83■□□□□ 0.12
Msh4Q99MT2 Gm21362-201ENSMUST00000194272 928 ntBASIC15.83■□□□□ 0.12
Msh4Q99MT2 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Msh4Q99MT2 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Msh4Q99MT2 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Msh4Q99MT2 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC15.83■□□□□ 0.12
Msh4Q99MT2 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Msh4Q99MT2 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Msh4Q99MT2 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Msh4Q99MT2 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC15.83■□□□□ 0.12
Msh4Q99MT2 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Msh4Q99MT2 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Msh4Q99MT2 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Msh4Q99MT2 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Msh4Q99MT2 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Msh4Q99MT2 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Msh4Q99MT2 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msh4Q99MT2 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC15.82■□□□□ 0.12
Msh4Q99MT2 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Msh4Q99MT2 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msh4Q99MT2 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msh4Q99MT2 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC15.82■□□□□ 0.12
Msh4Q99MT2 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Wnt10b-204ENSMUST00000226655 1807 ntBASIC15.82■□□□□ 0.12
Msh4Q99MT2 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Msh4Q99MT2 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Msh4Q99MT2 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Msh4Q99MT2 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Msh4Q99MT2 Gm13186-201ENSMUST00000118031 316 ntBASIC15.81■□□□□ 0.12
Msh4Q99MT2 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Msh4Q99MT2 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Msh4Q99MT2 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Msh4Q99MT2 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Msh4Q99MT2 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Msh4Q99MT2 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Msh4Q99MT2 AC122351.1-201ENSMUST00000220467 126 ntBASIC15.81■□□□□ 0.12
Msh4Q99MT2 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Msh4Q99MT2 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 105.6 ms