Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ushbp1Q8R370 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ushbp1Q8R370 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ushbp1Q8R370 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ushbp1Q8R370 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ushbp1Q8R370 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ushbp1Q8R370 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Ushbp1Q8R370 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC18.19■□□□□ 0.5
Ushbp1Q8R370 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ushbp1Q8R370 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Ushbp1Q8R370 Gm45328-201ENSMUST00000210942 917 ntBASIC18.19■□□□□ 0.5
Ushbp1Q8R370 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ushbp1Q8R370 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ushbp1Q8R370 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ushbp1Q8R370 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ushbp1Q8R370 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ushbp1Q8R370 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ushbp1Q8R370 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ushbp1Q8R370 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ushbp1Q8R370 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ushbp1Q8R370 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ushbp1Q8R370 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Gm42918-201ENSMUST00000199249 1580 ntBASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Gm34391-201ENSMUST00000203706 907 ntBASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ushbp1Q8R370 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ushbp1Q8R370 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Olfr129-201ENSMUST00000122318 993 ntBASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ushbp1Q8R370 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ushbp1Q8R370 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ushbp1Q8R370 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ushbp1Q8R370 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC18.16■□□□□ 0.5
Ushbp1Q8R370 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ushbp1Q8R370 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ushbp1Q8R370 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Ushbp1Q8R370 AC122351.1-201ENSMUST00000220467 126 ntBASIC18.16■□□□□ 0.5
Ushbp1Q8R370 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
Ushbp1Q8R370 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC18.16■□□□□ 0.5
Ushbp1Q8R370 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ushbp1Q8R370 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ushbp1Q8R370 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ushbp1Q8R370 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Ushbp1Q8R370 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ushbp1Q8R370 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ushbp1Q8R370 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
Ushbp1Q8R370 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ushbp1Q8R370 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Gm43072-201ENSMUST00000200283 1671 ntBASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms