Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
Trim56Q80VI1 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim56Q80VI1 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim56Q80VI1 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Trim56Q80VI1 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim56Q80VI1 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim56Q80VI1 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC19.15■□□□□ 0.66
Trim56Q80VI1 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC19.15■□□□□ 0.66
Trim56Q80VI1 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim56Q80VI1 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim56Q80VI1 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim56Q80VI1 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trim56Q80VI1 AC122335.2-201ENSMUST00000213901 6181 ntBASIC19.15■□□□□ 0.66
Trim56Q80VI1 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim56Q80VI1 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trim56Q80VI1 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim56Q80VI1 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trim56Q80VI1 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim56Q80VI1 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
Trim56Q80VI1 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim56Q80VI1 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim56Q80VI1 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
Trim56Q80VI1 Gm43548-201ENSMUST00000197139 2353 ntBASIC19.14■□□□□ 0.66
Trim56Q80VI1 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Trim56Q80VI1 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC19.14■□□□□ 0.65
Trim56Q80VI1 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim56Q80VI1 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC19.14■□□□□ 0.65
Trim56Q80VI1 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Trim56Q80VI1 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim56Q80VI1 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trim56Q80VI1 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trim56Q80VI1 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC19.14■□□□□ 0.65
Trim56Q80VI1 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
Trim56Q80VI1 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC19.14■□□□□ 0.65
Trim56Q80VI1 Gm8349-201ENSMUST00000182720 1003 ntBASIC19.14■□□□□ 0.65
Trim56Q80VI1 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC19.14■□□□□ 0.65
Trim56Q80VI1 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC19.14■□□□□ 0.65
Trim56Q80VI1 Umpk-ps-201ENSMUST00000211897 827 ntBASIC19.14■□□□□ 0.65
Trim56Q80VI1 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Trim56Q80VI1 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Trim56Q80VI1 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Trim56Q80VI1 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trim56Q80VI1 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
Trim56Q80VI1 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Trim56Q80VI1 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC19.14■□□□□ 0.65
Trim56Q80VI1 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim56Q80VI1 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim56Q80VI1 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim56Q80VI1 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trim56Q80VI1 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim56Q80VI1 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim56Q80VI1 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
Trim56Q80VI1 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim56Q80VI1 Gm7935-201ENSMUST00000100555 1278 ntBASIC19.13■□□□□ 0.65
Trim56Q80VI1 Gm15165-201ENSMUST00000118140 502 ntBASIC19.13■□□□□ 0.65
Trim56Q80VI1 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC19.13■□□□□ 0.65
Trim56Q80VI1 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim56Q80VI1 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim56Q80VI1 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim56Q80VI1 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trim56Q80VI1 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim56Q80VI1 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim56Q80VI1 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim56Q80VI1 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim56Q80VI1 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC19.12■□□□□ 0.65
Trim56Q80VI1 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim56Q80VI1 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trim56Q80VI1 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim56Q80VI1 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim56Q80VI1 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC19.12■□□□□ 0.65
Trim56Q80VI1 Gm1818-201ENSMUST00000169406 1184 ntBASIC19.12■□□□□ 0.65
Trim56Q80VI1 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
Trim56Q80VI1 AC108846.1-201ENSMUST00000214531 513 ntBASIC19.12■□□□□ 0.65
Trim56Q80VI1 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim56Q80VI1 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim56Q80VI1 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim56Q80VI1 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC19.12■□□□□ 0.65
Trim56Q80VI1 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim56Q80VI1 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim56Q80VI1 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim56Q80VI1 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Trim56Q80VI1 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim56Q80VI1 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim56Q80VI1 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim56Q80VI1 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trim56Q80VI1 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim56Q80VI1 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim56Q80VI1 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim56Q80VI1 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trim56Q80VI1 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
Trim56Q80VI1 Gm24589-201ENSMUST00000116692 94 ntBASIC19.11■□□□□ 0.65
Trim56Q80VI1 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC19.11■□□□□ 0.65
Trim56Q80VI1 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC19.11■□□□□ 0.65
Trim56Q80VI1 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trim56Q80VI1 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim56Q80VI1 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trim56Q80VI1 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim56Q80VI1 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim56Q80VI1 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim56Q80VI1 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms