Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rtl3Q6P1Y1 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rtl3Q6P1Y1 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rtl3Q6P1Y1 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.27
Rtl3Q6P1Y1 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
Rtl3Q6P1Y1 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rtl3Q6P1Y1 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Rtl3Q6P1Y1 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC16.77■□□□□ 0.27
Rtl3Q6P1Y1 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rtl3Q6P1Y1 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC16.77■□□□□ 0.27
Rtl3Q6P1Y1 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rtl3Q6P1Y1 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Spr-ps1-201ENSMUST00000089584 605 ntBASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC16.76■□□□□ 0.27
Rtl3Q6P1Y1 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rtl3Q6P1Y1 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rtl3Q6P1Y1 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rtl3Q6P1Y1 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rtl3Q6P1Y1 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Rtl3Q6P1Y1 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rtl3Q6P1Y1 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rtl3Q6P1Y1 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Rtl3Q6P1Y1 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Rtl3Q6P1Y1 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Rtl3Q6P1Y1 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Rtl3Q6P1Y1 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Rtl3Q6P1Y1 Gm34391-201ENSMUST00000203706 907 ntBASIC16.75■□□□□ 0.27
Rtl3Q6P1Y1 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC16.75■□□□□ 0.27
Rtl3Q6P1Y1 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rtl3Q6P1Y1 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Rtl3Q6P1Y1 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rtl3Q6P1Y1 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Rtl3Q6P1Y1 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
Rtl3Q6P1Y1 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rtl3Q6P1Y1 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Rtl3Q6P1Y1 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Rtl3Q6P1Y1 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Rtl3Q6P1Y1 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rtl3Q6P1Y1 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC16.73■□□□□ 0.27
Rtl3Q6P1Y1 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rtl3Q6P1Y1 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rtl3Q6P1Y1 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC16.73■□□□□ 0.27
Rtl3Q6P1Y1 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC16.73■□□□□ 0.27
Rtl3Q6P1Y1 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Rtl3Q6P1Y1 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rtl3Q6P1Y1 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rtl3Q6P1Y1 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Rtl3Q6P1Y1 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rtl3Q6P1Y1 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms