Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
Trim28Q62318 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim28Q62318 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim28Q62318 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC21.03■□□□□ 0.96
Trim28Q62318 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim28Q62318 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC21.03■□□□□ 0.96
Trim28Q62318 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Trim28Q62318 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC21.03■□□□□ 0.96
Trim28Q62318 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim28Q62318 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Trim28Q62318 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim28Q62318 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim28Q62318 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Trim28Q62318 Gm37500-201ENSMUST00000192059 1443 ntBASIC21.03■□□□□ 0.96
Trim28Q62318 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim28Q62318 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim28Q62318 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim28Q62318 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Trim28Q62318 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim28Q62318 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim28Q62318 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim28Q62318 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Trim28Q62318 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim28Q62318 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim28Q62318 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Trim28Q62318 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim28Q62318 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Trim28Q62318 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Trim28Q62318 Rbfox2-206ENSMUST00000227314 1810 ntBASIC21.01■□□□□ 0.95
Trim28Q62318 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Trim28Q62318 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Trim28Q62318 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Trim28Q62318 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim28Q62318 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim28Q62318 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim28Q62318 Gm13036-201ENSMUST00000117799 748 ntBASIC21.01■□□□□ 0.95
Trim28Q62318 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC21.01■□□□□ 0.95
Trim28Q62318 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC21.01■□□□□ 0.95
Trim28Q62318 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Trim28Q62318 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim28Q62318 Gm5682-201ENSMUST00000173402 505 ntBASIC21.01■□□□□ 0.95
Trim28Q62318 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC21.01■□□□□ 0.95
Trim28Q62318 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim28Q62318 Gm15590-201ENSMUST00000078419 552 ntBASIC21.01■□□□□ 0.95
Trim28Q62318 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Trim28Q62318 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
Trim28Q62318 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim28Q62318 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim28Q62318 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim28Q62318 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC21■□□□□ 0.95
Trim28Q62318 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Trim28Q62318 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim28Q62318 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Trim28Q62318 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC21■□□□□ 0.95
Trim28Q62318 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC21■□□□□ 0.95
Trim28Q62318 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim28Q62318 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim28Q62318 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim28Q62318 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim28Q62318 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim28Q62318 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim28Q62318 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trim28Q62318 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trim28Q62318 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim28Q62318 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim28Q62318 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trim28Q62318 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim28Q62318 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim28Q62318 Gm6257-201ENSMUST00000163864 910 ntBASIC20.99■□□□□ 0.95
Trim28Q62318 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC20.99■□□□□ 0.95
Trim28Q62318 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC20.99■□□□□ 0.95
Trim28Q62318 Gm27628-201ENSMUST00000184911 107 ntBASIC20.99■□□□□ 0.95
Trim28Q62318 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC20.99■□□□□ 0.95
Trim28Q62318 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC20.99■□□□□ 0.95
Trim28Q62318 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim28Q62318 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim28Q62318 Gm7292-201ENSMUST00000194706 2527 ntBASIC20.99■□□□□ 0.95
Trim28Q62318 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim28Q62318 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Trim28Q62318 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim28Q62318 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim28Q62318 Haglr-201ENSMUST00000100000 2085 ntBASIC20.98■□□□□ 0.95
Trim28Q62318 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim28Q62318 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Trim28Q62318 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim28Q62318 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim28Q62318 Gm7222-201ENSMUST00000117512 906 ntBASIC20.98■□□□□ 0.95
Trim28Q62318 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
Trim28Q62318 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC20.98■□□□□ 0.95
Trim28Q62318 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Trim28Q62318 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC20.98■□□□□ 0.95
Trim28Q62318 Psmb5-202ENSMUST00000227257 622 ntBASIC20.98■□□□□ 0.95
Trim28Q62318 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim28Q62318 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim28Q62318 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Trim28Q62318 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Trim28Q62318 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim28Q62318 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim28Q62318 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC20.98■□□□□ 0.95
Trim28Q62318 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms