Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim27Q62158 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim27Q62158 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC19.96■□□□□ 0.79
Trim27Q62158 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Trim27Q62158 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trim27Q62158 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trim27Q62158 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trim27Q62158 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim27Q62158 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim27Q62158 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trim27Q62158 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trim27Q62158 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim27Q62158 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim27Q62158 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim27Q62158 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim27Q62158 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim27Q62158 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trim27Q62158 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Trim27Q62158 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trim27Q62158 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trim27Q62158 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim27Q62158 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC19.95■□□□□ 0.79
Trim27Q62158 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC19.95■□□□□ 0.78
Trim27Q62158 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim27Q62158 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim27Q62158 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Trim27Q62158 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim27Q62158 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim27Q62158 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim27Q62158 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim27Q62158 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim27Q62158 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Trim27Q62158 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC19.95■□□□□ 0.78
Trim27Q62158 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC19.95■□□□□ 0.78
Trim27Q62158 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
Trim27Q62158 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim27Q62158 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim27Q62158 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Trim27Q62158 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Trim27Q62158 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Trim27Q62158 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Trim27Q62158 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim27Q62158 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim27Q62158 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Trim27Q62158 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim27Q62158 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim27Q62158 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim27Q62158 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC19.94■□□□□ 0.78
Trim27Q62158 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim27Q62158 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Trim27Q62158 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC19.94■□□□□ 0.78
Trim27Q62158 Ntrk2-205ENSMUST00000224402 2284 ntBASIC19.94■□□□□ 0.78
Trim27Q62158 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim27Q62158 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
Trim27Q62158 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
Trim27Q62158 AC154471.1-201ENSMUST00000224418 436 ntBASIC19.94■□□□□ 0.78
Trim27Q62158 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim27Q62158 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim27Q62158 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim27Q62158 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
Trim27Q62158 Rbfox2-206ENSMUST00000227314 1810 ntBASIC19.94■□□□□ 0.78
Trim27Q62158 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim27Q62158 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Trim27Q62158 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC19.94■□□□□ 0.78
Trim27Q62158 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC19.94■□□□□ 0.78
Trim27Q62158 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Trim27Q62158 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim27Q62158 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim27Q62158 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC19.93■□□□□ 0.78
Trim27Q62158 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim27Q62158 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim27Q62158 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC19.93■□□□□ 0.78
Trim27Q62158 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim27Q62158 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Trim27Q62158 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Trim27Q62158 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Trim27Q62158 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
Trim27Q62158 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Trim27Q62158 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC19.93■□□□□ 0.78
Trim27Q62158 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim27Q62158 Gm45328-201ENSMUST00000210942 917 ntBASIC19.93■□□□□ 0.78
Trim27Q62158 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim27Q62158 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim27Q62158 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Trim27Q62158 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim27Q62158 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Trim27Q62158 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim27Q62158 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim27Q62158 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Trim27Q62158 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Trim27Q62158 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim27Q62158 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim27Q62158 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim27Q62158 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim27Q62158 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
Trim27Q62158 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC19.92■□□□□ 0.78
Trim27Q62158 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC19.92■□□□□ 0.78
Trim27Q62158 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Trim27Q62158 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim27Q62158 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms