Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp28Q5I043 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp28Q5I043 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp28Q5I043 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp28Q5I043 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp28Q5I043 Gm44729-201ENSMUST00000206759 2052 ntBASIC18.46■□□□□ 0.55
Usp28Q5I043 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC18.46■□□□□ 0.55
Usp28Q5I043 App-207ENSMUST00000227737 2827 ntBASIC18.46■□□□□ 0.55
Usp28Q5I043 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp28Q5I043 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Usp28Q5I043 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp28Q5I043 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC18.46■□□□□ 0.55
Usp28Q5I043 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Usp28Q5I043 Mir5130-201ENSMUST00000175160 84 ntBASIC18.46■□□□□ 0.55
Usp28Q5I043 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Usp28Q5I043 Gm43799-201ENSMUST00000201845 579 ntBASIC18.46■□□□□ 0.55
Usp28Q5I043 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp28Q5I043 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp28Q5I043 Gm32996-201ENSMUST00000199828 1447 ntBASIC18.46■□□□□ 0.55
Usp28Q5I043 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp28Q5I043 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp28Q5I043 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp28Q5I043 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp28Q5I043 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp28Q5I043 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Usp28Q5I043 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.54
Usp28Q5I043 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC18.45■□□□□ 0.54
Usp28Q5I043 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp28Q5I043 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp28Q5I043 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC18.45■□□□□ 0.54
Usp28Q5I043 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp28Q5I043 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp28Q5I043 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp28Q5I043 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Usp28Q5I043 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp28Q5I043 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
Usp28Q5I043 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp28Q5I043 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Usp28Q5I043 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp28Q5I043 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC18.45■□□□□ 0.54
Usp28Q5I043 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
Usp28Q5I043 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Usp28Q5I043 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC18.45■□□□□ 0.54
Usp28Q5I043 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
Usp28Q5I043 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp28Q5I043 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp28Q5I043 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp28Q5I043 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp28Q5I043 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC18.45■□□□□ 0.54
Usp28Q5I043 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Usp28Q5I043 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp28Q5I043 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp28Q5I043 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Usp28Q5I043 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp28Q5I043 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp28Q5I043 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp28Q5I043 Gm44616-201ENSMUST00000206417 1732 ntBASIC18.44■□□□□ 0.54
Usp28Q5I043 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Usp28Q5I043 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC18.44■□□□□ 0.54
Usp28Q5I043 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp28Q5I043 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Usp28Q5I043 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC18.44■□□□□ 0.54
Usp28Q5I043 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC18.44■□□□□ 0.54
Usp28Q5I043 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp28Q5I043 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC18.44■□□□□ 0.54
Usp28Q5I043 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Usp28Q5I043 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp28Q5I043 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Usp28Q5I043 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Usp28Q5I043 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp28Q5I043 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp28Q5I043 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC18.44■□□□□ 0.54
Usp28Q5I043 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Usp28Q5I043 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp28Q5I043 Rbfox2-206ENSMUST00000227314 1810 ntBASIC18.44■□□□□ 0.54
Usp28Q5I043 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Usp28Q5I043 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Usp28Q5I043 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Usp28Q5I043 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp28Q5I043 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp28Q5I043 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp28Q5I043 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp28Q5I043 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp28Q5I043 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Usp28Q5I043 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp28Q5I043 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Usp28Q5I043 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Usp28Q5I043 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp28Q5I043 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC18.43■□□□□ 0.54
Usp28Q5I043 Gm45058-201ENSMUST00000205810 766 ntBASIC18.43■□□□□ 0.54
Usp28Q5I043 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp28Q5I043 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp28Q5I043 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
Usp28Q5I043 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Usp28Q5I043 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp28Q5I043 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp28Q5I043 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp28Q5I043 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Usp28Q5I043 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp28Q5I043 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms