Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ercc3P49135 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ercc3P49135 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ercc3P49135 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC19.25■□□□□ 0.67
Ercc3P49135 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Ercc3P49135 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Ercc3P49135 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Ercc3P49135 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Ercc3P49135 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ercc3P49135 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ercc3P49135 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ercc3P49135 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ercc3P49135 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ercc3P49135 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ercc3P49135 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC19.25■□□□□ 0.67
Ercc3P49135 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ercc3P49135 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ercc3P49135 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC19.24■□□□□ 0.67
Ercc3P49135 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ercc3P49135 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ercc3P49135 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC19.24■□□□□ 0.67
Ercc3P49135 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ercc3P49135 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC19.24■□□□□ 0.67
Ercc3P49135 Mir3081-201ENSMUST00000175305 84 ntBASIC19.24■□□□□ 0.67
Ercc3P49135 Gm17807-201ENSMUST00000186869 298 ntBASIC19.24■□□□□ 0.67
Ercc3P49135 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ercc3P49135 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ercc3P49135 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ercc3P49135 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC19.24■□□□□ 0.67
Ercc3P49135 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
Ercc3P49135 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ercc3P49135 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC19.24■□□□□ 0.67
Ercc3P49135 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ercc3P49135 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ercc3P49135 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ercc3P49135 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ercc3P49135 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ercc3P49135 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ercc3P49135 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ercc3P49135 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC19.23■□□□□ 0.67
Ercc3P49135 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ercc3P49135 Gm10052-201ENSMUST00000168019 960 ntBASIC19.23■□□□□ 0.67
Ercc3P49135 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC19.23■□□□□ 0.67
Ercc3P49135 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC19.23■□□□□ 0.67
Ercc3P49135 Gm7729-201ENSMUST00000050143 801 ntBASIC19.23■□□□□ 0.67
Ercc3P49135 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
Ercc3P49135 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ercc3P49135 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ercc3P49135 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ercc3P49135 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ercc3P49135 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ercc3P49135 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ercc3P49135 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ercc3P49135 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ercc3P49135 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ercc3P49135 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
Ercc3P49135 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ercc3P49135 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ercc3P49135 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC19.22■□□□□ 0.67
Ercc3P49135 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ercc3P49135 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Ercc3P49135 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ercc3P49135 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ercc3P49135 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ercc3P49135 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ercc3P49135 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
Ercc3P49135 Gm9103-201ENSMUST00000119371 405 ntBASIC19.22■□□□□ 0.67
Ercc3P49135 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ercc3P49135 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC19.22■□□□□ 0.67
Ercc3P49135 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC19.22■□□□□ 0.67
Ercc3P49135 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ercc3P49135 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ercc3P49135 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ercc3P49135 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ercc3P49135 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ercc3P49135 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ercc3P49135 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ercc3P49135 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ercc3P49135 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ercc3P49135 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ercc3P49135 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ercc3P49135 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC19.21■□□□□ 0.67
Ercc3P49135 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ercc3P49135 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ercc3P49135 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ercc3P49135 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
Ercc3P49135 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Ercc3P49135 Gm28033-201ENSMUST00000184224 96 ntBASIC19.21■□□□□ 0.67
Ercc3P49135 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ercc3P49135 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
Ercc3P49135 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ercc3P49135 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ercc3P49135 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ercc3P49135 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ercc3P49135 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ercc3P49135 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ercc3P49135 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ercc3P49135 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ercc3P49135 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ercc3P49135 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms