Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Sdc1P18828 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Sdc1P18828 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Sdc1P18828 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Sdc1P18828 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Sdc1P18828 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Sdc1P18828 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Sdc1P18828 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC13.4□□□□□ -0.27
Sdc1P18828 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Sdc1P18828 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Sdc1P18828 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Sdc1P18828 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Sdc1P18828 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC13.39□□□□□ -0.27
Sdc1P18828 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 CT010444.2-201ENSMUST00000217877 1629 ntBASIC13.39□□□□□ -0.27
Sdc1P18828 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sdc1P18828 Gm37305-201ENSMUST00000195714 4279 ntBASIC13.39□□□□□ -0.27
Sdc1P18828 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sdc1P18828 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Sdc1P18828 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Sdc1P18828 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sdc1P18828 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sdc1P18828 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sdc1P18828 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sdc1P18828 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Sdc1P18828 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC13.38□□□□□ -0.27
Sdc1P18828 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Sdc1P18828 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sdc1P18828 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sdc1P18828 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Sdc1P18828 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sdc1P18828 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC13.38□□□□□ -0.27
Sdc1P18828 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC13.38□□□□□ -0.27
Sdc1P18828 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sdc1P18828 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sdc1P18828 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sdc1P18828 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sdc1P18828 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Sdc1P18828 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sdc1P18828 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sdc1P18828 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sdc1P18828 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sdc1P18828 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC13.38□□□□□ -0.27
Sdc1P18828 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
Sdc1P18828 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Sdc1P18828 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC13.37□□□□□ -0.27
Sdc1P18828 Wnt10b-205ENSMUST00000226846 1204 ntBASIC13.37□□□□□ -0.27
Sdc1P18828 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Sdc1P18828 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms