Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RaraP11416 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
RaraP11416 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RaraP11416 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
RaraP11416 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
RaraP11416 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC17.6■□□□□ 0.41
RaraP11416 AC153526.5-201ENSMUST00000218661 2147 ntBASIC17.6■□□□□ 0.41
RaraP11416 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RaraP11416 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RaraP11416 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RaraP11416 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RaraP11416 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RaraP11416 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RaraP11416 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RaraP11416 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RaraP11416 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RaraP11416 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RaraP11416 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RaraP11416 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RaraP11416 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RaraP11416 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RaraP11416 Gm13559-201ENSMUST00000120476 863 ntBASIC17.59■□□□□ 0.41
RaraP11416 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RaraP11416 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC17.59■□□□□ 0.41
RaraP11416 Gm29707-201ENSMUST00000196325 491 ntBASIC17.59■□□□□ 0.41
RaraP11416 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC17.59■□□□□ 0.41
RaraP11416 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RaraP11416 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RaraP11416 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
RaraP11416 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RaraP11416 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RaraP11416 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RaraP11416 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RaraP11416 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RaraP11416 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC17.59■□□□□ 0.41
RaraP11416 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RaraP11416 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
RaraP11416 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
RaraP11416 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
RaraP11416 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
RaraP11416 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
RaraP11416 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
RaraP11416 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
RaraP11416 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
RaraP11416 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RaraP11416 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
RaraP11416 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC17.58■□□□□ 0.4
RaraP11416 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
RaraP11416 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RaraP11416 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RaraP11416 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RaraP11416 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RaraP11416 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RaraP11416 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RaraP11416 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
RaraP11416 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
RaraP11416 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
RaraP11416 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RaraP11416 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RaraP11416 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RaraP11416 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RaraP11416 Gm15442-201ENSMUST00000117905 1527 ntBASIC17.57■□□□□ 0.4
RaraP11416 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RaraP11416 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RaraP11416 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
RaraP11416 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
RaraP11416 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RaraP11416 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RaraP11416 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC17.57■□□□□ 0.4
RaraP11416 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RaraP11416 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC17.57■□□□□ 0.4
RaraP11416 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RaraP11416 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RaraP11416 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC17.57■□□□□ 0.4
RaraP11416 Gm42473-201ENSMUST00000201056 2291 ntBASIC17.57■□□□□ 0.4
RaraP11416 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RaraP11416 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
RaraP11416 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC17.57■□□□□ 0.4
RaraP11416 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RaraP11416 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC17.57■□□□□ 0.4
RaraP11416 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
RaraP11416 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
RaraP11416 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RaraP11416 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RaraP11416 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RaraP11416 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RaraP11416 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
RaraP11416 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RaraP11416 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
RaraP11416 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RaraP11416 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RaraP11416 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RaraP11416 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
RaraP11416 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RaraP11416 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RaraP11416 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RaraP11416 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
RaraP11416 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RaraP11416 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
RaraP11416 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms