Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Smarce1O54941 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Smarce1O54941 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Smarce1O54941 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Smarce1O54941 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC19.33■□□□□ 0.68
Smarce1O54941 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Smarce1O54941 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC19.33■□□□□ 0.68
Smarce1O54941 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC19.33■□□□□ 0.68
Smarce1O54941 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC19.33■□□□□ 0.68
Smarce1O54941 Gm2274-201ENSMUST00000184539 609 ntBASIC19.33■□□□□ 0.68
Smarce1O54941 Gm18421-201ENSMUST00000204122 625 ntBASIC19.33■□□□□ 0.68
Smarce1O54941 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC19.33■□□□□ 0.68
Smarce1O54941 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.68
Smarce1O54941 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Smarce1O54941 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Smarce1O54941 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Smarce1O54941 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Smarce1O54941 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Smarce1O54941 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
Smarce1O54941 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Smarce1O54941 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Smarce1O54941 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Smarce1O54941 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Smarce1O54941 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Smarce1O54941 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
Smarce1O54941 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Smarce1O54941 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Smarce1O54941 Gm22240-201ENSMUST00000175225 82 ntBASIC19.32■□□□□ 0.68
Smarce1O54941 Gm36967-201ENSMUST00000193814 266 ntBASIC19.32■□□□□ 0.68
Smarce1O54941 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Smarce1O54941 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Smarce1O54941 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Smarce1O54941 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Smarce1O54941 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC19.32■□□□□ 0.68
Smarce1O54941 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC19.32■□□□□ 0.68
Smarce1O54941 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Smarce1O54941 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Smarce1O54941 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Smarce1O54941 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Smarce1O54941 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Smarce1O54941 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Smarce1O54941 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Smarce1O54941 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC19.31■□□□□ 0.68
Smarce1O54941 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Smarce1O54941 Spsb2-203ENSMUST00000112473 1322 ntBASIC19.31■□□□□ 0.68
Smarce1O54941 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC19.31■□□□□ 0.68
Smarce1O54941 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smarce1O54941 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smarce1O54941 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smarce1O54941 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC19.31■□□□□ 0.68
Smarce1O54941 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smarce1O54941 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Smarce1O54941 Slc35b2-202ENSMUST00000223987 1766 ntBASIC19.31■□□□□ 0.68
Smarce1O54941 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smarce1O54941 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smarce1O54941 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smarce1O54941 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smarce1O54941 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Smarce1O54941 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smarce1O54941 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Smarce1O54941 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC19.3■□□□□ 0.68
Smarce1O54941 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Smarce1O54941 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Smarce1O54941 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Smarce1O54941 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC19.3■□□□□ 0.68
Smarce1O54941 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smarce1O54941 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC19.3■□□□□ 0.68
Smarce1O54941 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smarce1O54941 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Smarce1O54941 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Smarce1O54941 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC19.3■□□□□ 0.68
Smarce1O54941 Gm29707-201ENSMUST00000196325 491 ntBASIC19.3■□□□□ 0.68
Smarce1O54941 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC19.3■□□□□ 0.68
Smarce1O54941 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smarce1O54941 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smarce1O54941 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Smarce1O54941 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Smarce1O54941 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Smarce1O54941 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Smarce1O54941 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smarce1O54941 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smarce1O54941 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smarce1O54941 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smarce1O54941 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smarce1O54941 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Smarce1O54941 Gm5421-201ENSMUST00000181698 2354 ntBASIC19.29■□□□□ 0.68
Smarce1O54941 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Smarce1O54941 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smarce1O54941 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Smarce1O54941 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Smarce1O54941 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smarce1O54941 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Smarce1O54941 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smarce1O54941 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC19.29■□□□□ 0.68
Smarce1O54941 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smarce1O54941 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Smarce1O54941 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Smarce1O54941 AC093043.3-201ENSMUST00000226531 2273 ntBASIC19.29■□□□□ 0.68
Smarce1O54941 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
Smarce1O54941 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms