Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC13.53□□□□□ -0.24
Hmgb3O54879 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Hmgb3O54879 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
Hmgb3O54879 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
Hmgb3O54879 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Hmgb3O54879 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC13.52□□□□□ -0.24
Hmgb3O54879 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Hmgb3O54879 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC13.52□□□□□ -0.24
Hmgb3O54879 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Hmgb3O54879 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Hmgb3O54879 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Hmgb3O54879 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Hmgb3O54879 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Hmgb3O54879 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Hmgb3O54879 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Hmgb3O54879 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
Hmgb3O54879 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Hmgb3O54879 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Hmgb3O54879 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC13.52□□□□□ -0.25
Hmgb3O54879 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC13.52□□□□□ -0.25
Hmgb3O54879 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Hmgb3O54879 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Hmgb3O54879 Gm6211-202ENSMUST00000167849 925 ntBASIC13.52□□□□□ -0.25
Hmgb3O54879 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Hmgb3O54879 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Hmgb3O54879 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC13.52□□□□□ -0.25
Hmgb3O54879 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Hmgb3O54879 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Hmgb3O54879 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Hmgb3O54879 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC13.52□□□□□ -0.25
Hmgb3O54879 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Hmgb3O54879 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Hmgb3O54879 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Hmgb3O54879 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Hmgb3O54879 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Hmgb3O54879 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Hmgb3O54879 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Hmgb3O54879 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Hmgb3O54879 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC13.51□□□□□ -0.25
Hmgb3O54879 Gm6576-201ENSMUST00000169678 883 ntBASIC13.51□□□□□ -0.25
Hmgb3O54879 Gm42642-201ENSMUST00000200683 355 ntBASIC13.51□□□□□ -0.25
Hmgb3O54879 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Hmgb3O54879 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Hmgb3O54879 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Hmgb3O54879 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Hmgb3O54879 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Hmgb3O54879 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Hmgb3O54879 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC13.5□□□□□ -0.25
Hmgb3O54879 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC13.5□□□□□ -0.25
Hmgb3O54879 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC13.5□□□□□ -0.25
Hmgb3O54879 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC13.5□□□□□ -0.25
Hmgb3O54879 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 Gm11643-201ENSMUST00000119578 864 ntBASIC13.5□□□□□ -0.25
Hmgb3O54879 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Hmgb3O54879 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC13.5□□□□□ -0.25
Hmgb3O54879 Prob1-201ENSMUST00000097619 3021 ntBASIC13.5□□□□□ -0.25
Hmgb3O54879 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Hmgb3O54879 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Hmgb3O54879 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC13.49□□□□□ -0.25
Hmgb3O54879 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC13.49□□□□□ -0.25
Hmgb3O54879 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Gm15847-201ENSMUST00000121417 1065 ntBASIC13.49□□□□□ -0.25
Hmgb3O54879 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 AV356131-201ENSMUST00000206201 750 ntBASIC13.49□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms