Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Chd3B1AR17 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Chd3B1AR17 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Chd3B1AR17 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Chd3B1AR17 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Chd3B1AR17 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Chd3B1AR17 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Chd3B1AR17 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Chd3B1AR17 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Chd3B1AR17 Gm8784-201ENSMUST00000222096 1435 ntBASIC15.86■□□□□ 0.13
Chd3B1AR17 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Chd3B1AR17 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Chd3B1AR17 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Chd3B1AR17 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Chd3B1AR17 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Chd3B1AR17 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC15.86■□□□□ 0.13
Chd3B1AR17 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Chd3B1AR17 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC15.86■□□□□ 0.13
Chd3B1AR17 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Chd3B1AR17 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
Chd3B1AR17 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Chd3B1AR17 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Chd3B1AR17 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC15.86■□□□□ 0.13
Chd3B1AR17 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Chd3B1AR17 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Chd3B1AR17 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Chd3B1AR17 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Chd3B1AR17 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Chd3B1AR17 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Chd3B1AR17 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Chd3B1AR17 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Chd3B1AR17 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Chd3B1AR17 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Chd3B1AR17 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC15.85■□□□□ 0.13
Chd3B1AR17 Gm27525-201ENSMUST00000184465 107 ntBASIC15.85■□□□□ 0.13
Chd3B1AR17 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC15.85■□□□□ 0.13
Chd3B1AR17 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Chd3B1AR17 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Chd3B1AR17 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Chd3B1AR17 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Chd3B1AR17 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Chd3B1AR17 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Chd3B1AR17 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Chd3B1AR17 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Chd3B1AR17 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Chd3B1AR17 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Chd3B1AR17 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Chd3B1AR17 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Chd3B1AR17 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Chd3B1AR17 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Chd3B1AR17 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC15.85■□□□□ 0.13
Chd3B1AR17 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Chd3B1AR17 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Chd3B1AR17 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Chd3B1AR17 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Chd3B1AR17 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Chd3B1AR17 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Chd3B1AR17 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Chd3B1AR17 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Chd3B1AR17 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Chd3B1AR17 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
Chd3B1AR17 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Chd3B1AR17 Mir6404-201ENSMUST00000183699 94 ntBASIC15.84■□□□□ 0.13
Chd3B1AR17 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC15.84■□□□□ 0.13
Chd3B1AR17 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Chd3B1AR17 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Chd3B1AR17 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Chd3B1AR17 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Chd3B1AR17 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Chd3B1AR17 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Chd3B1AR17 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Chd3B1AR17 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Chd3B1AR17 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Chd3B1AR17 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Chd3B1AR17 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Chd3B1AR17 AW822252-206ENSMUST00000208904 237 ntBASIC15.83■□□□□ 0.13
Chd3B1AR17 Ddx41-204ENSMUST00000224765 2199 ntBASIC15.83■□□□□ 0.13
Chd3B1AR17 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Chd3B1AR17 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Chd3B1AR17 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Chd3B1AR17 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Chd3B1AR17 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Chd3B1AR17 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Chd3B1AR17 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Chd3B1AR17 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Chd3B1AR17 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.12
Chd3B1AR17 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Chd3B1AR17 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Chd3B1AR17 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC15.83■□□□□ 0.12
Chd3B1AR17 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC15.83■□□□□ 0.12
Chd3B1AR17 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Chd3B1AR17 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Chd3B1AR17 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Chd3B1AR17 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Chd3B1AR17 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Chd3B1AR17 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Chd3B1AR17 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Chd3B1AR17 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Chd3B1AR17 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Chd3B1AR17 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms