Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 AC005178.1-201ENST00000508392 440 ntBASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 AC234781.5-201ENST00000508429 271 ntBASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 TTC39CP1-201ENST00000512513 755 ntBASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 AC116347.2-201ENST00000514912 523 ntBASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 AC109329.2-201ENST00000519658 482 ntBASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 AC060788.1-201ENST00000521318 469 ntBASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 CASP1P1-201ENST00000526345 212 ntBASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 AP002770.2-201ENST00000543613 532 ntBASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 AL355836.1-201ENST00000555951 870 ntBASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 AL357094.1-201ENST00000603845 844 ntBASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 AC011451.2-201ENST00000604303 598 ntBASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 AC105129.3-201ENST00000605455 485 ntBASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 AC091965.4-201ENST00000607691 587 ntBASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 AC090132.2-201ENST00000615881 347 ntBASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 AL590808.1-201ENST00000618696 141 ntBASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 AC079248.2-201ENST00000623779 326 ntBASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 AL136313.1-201ENST00000624804 202 ntBASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.03□□□□□ -2.08
TRAV40A0A0B4J280 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 MAPK10-266ENST00000641066 6555 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 RNA5SP289-201ENST00000362332 137 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 Y_RNA.46-201ENST00000362695 102 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 SNORA25.6-201ENST00000364121 118 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 RNU6-359P-201ENST00000365466 108 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 SNORD21-201ENST00000383953 95 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 SNORA36C-201ENST00000384289 132 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 RPS20P2-201ENST00000402520 389 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AL359704.1-201ENST00000411586 781 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AL365184.2-201ENST00000431139 435 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 ST13P20-201ENST00000447996 1065 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AC234775.1-201ENST00000454247 670 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 MTCO2P6-201ENST00000463134 685 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AC055855.1-201ENST00000489563 579 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AC105914.1-201ENST00000511798 226 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 RNA5SP24-201ENST00000516478 95 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 RNA5SP468-201ENST00000516782 93 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 MAL2-206ENST00000522187 547 ntTSL 4 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 DEFB108D-201ENST00000527787 222 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AC123904.2-201ENST00000548059 300 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 MTCO3P24-201ENST00000572729 782 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AC105224.1-201ENST00000587055 421 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AL109653.1-201ENST00000603091 248 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AC007938.3-201ENST00000604965 623 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AC090425.2-201ENST00000608818 501 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AF246928.1-201ENST00000623768 87 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AC064859.1-201ENST00000624741 174 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 OR4G2P-202ENST00000641004 1759 ntBASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.02□□□□□ -2.09
TRAV40A0A0B4J280 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.01□□□□□ -2.09
TRAV40A0A0B4J280 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
TRAV40A0A0B4J280 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC2.01□□□□□ -2.09
TRAV40A0A0B4J280 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
TRAV40A0A0B4J280 ANKRD20A17P-201ENST00000511745 1330 ntBASIC2.01□□□□□ -2.09
TRAV40A0A0B4J280 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
TRAV40A0A0B4J280 RNU6-50P-201ENST00000362356 103 ntBASIC2.01□□□□□ -2.09
TRAV40A0A0B4J280 DEFA7P-201ENST00000382676 285 ntBASIC2.01□□□□□ -2.09
TRAV40A0A0B4J280 MIR19A-201ENST00000384878 82 ntBASIC2.01□□□□□ -2.09
TRAV40A0A0B4J280 U3.20-201ENST00000390909 217 ntBASIC2.01□□□□□ -2.09
TRAV40A0A0B4J280 RPS3AP26-201ENST00000398259 784 ntBASIC2.01□□□□□ -2.09
TRAV40A0A0B4J280 AL162578.1-201ENST00000406202 378 ntBASIC2.01□□□□□ -2.09
TRAV40A0A0B4J280 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.01□□□□□ -2.09
TRAV40A0A0B4J280 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.01□□□□□ -2.09
TRAV40A0A0B4J280 AC092573.2-201ENST00000434546 243 ntBASIC2.01□□□□□ -2.09
TRAV40A0A0B4J280 AL512286.1-201ENST00000439244 400 ntBASIC2.01□□□□□ -2.09
TRAV40A0A0B4J280 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC2.01□□□□□ -2.09
TRAV40A0A0B4J280 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC2.01□□□□□ -2.09
TRAV40A0A0B4J280 RPL23AP20-201ENST00000447965 421 ntBASIC2.01□□□□□ -2.09
TRAV40A0A0B4J280 AC093392.2-201ENST00000450682 337 ntBASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms