Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 APOOP3-201ENST00000536787 586 ntBASIC0.71□□□□□ -2.3
COL7A1Q02388 MIR5589-201ENST00000579442 60 ntBASIC0.71□□□□□ -2.3
COL7A1Q02388 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC0.71□□□□□ -2.3
COL7A1Q02388 DPRXP5-201ENST00000604662 539 ntBASIC0.71□□□□□ -2.3
COL7A1Q02388 AK6-205ENST00000618980 483 ntTSL 2 BASIC0.71□□□□□ -2.3
COL7A1Q02388 AC131280.1-202ENST00000624067 4211 ntBASIC0.71□□□□□ -2.3
COL7A1Q02388 MTND4P27-201ENST00000450813 1354 ntBASIC0.71□□□□□ -2.3
COL7A1Q02388 RNU6-72P-201ENST00000384285 79 ntBASIC0.71□□□□□ -2.3
COL7A1Q02388 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC0.71□□□□□ -2.3
COL7A1Q02388 snoU13.19-201ENST00000459148 104 ntBASIC0.71□□□□□ -2.3
COL7A1Q02388 SNORA31.16-201ENST00000516773 139 ntBASIC0.71□□□□□ -2.3
COL7A1Q02388 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC0.71□□□□□ -2.3
COL7A1Q02388 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC0.71□□□□□ -2.3
COL7A1Q02388 AC004808.1-201ENST00000627671 721 ntBASIC0.71□□□□□ -2.3
COL7A1Q02388 AC097655.1-201ENST00000635075 318 ntBASIC0.71□□□□□ -2.3
COL7A1Q02388 RNU6-17P-201ENST00000384245 107 ntBASIC0.7□□□□□ -2.3
COL7A1Q02388 RNU6-18P-201ENST00000384527 107 ntBASIC0.7□□□□□ -2.3
COL7A1Q02388 FO393413.1-201ENST00000402892 195 ntBASIC0.7□□□□□ -2.3
COL7A1Q02388 RN7SKP51-201ENST00000410781 304 ntBASIC0.7□□□□□ -2.3
COL7A1Q02388 TRAPPC2P9-201ENST00000434556 343 ntBASIC0.7□□□□□ -2.3
COL7A1Q02388 GDI2P2-201ENST00000445131 608 ntBASIC0.7□□□□□ -2.3
COL7A1Q02388 NAA50-206ENST00000493454 964 ntTSL 2 BASIC0.7□□□□□ -2.3
COL7A1Q02388 RN7SKP179-201ENST00000516126 217 ntBASIC0.7□□□□□ -2.3
COL7A1Q02388 RN7SKP34-201ENST00000516142 244 ntBASIC0.7□□□□□ -2.3
COL7A1Q02388 CYCSP23-201ENST00000519781 313 ntBASIC0.7□□□□□ -2.3
COL7A1Q02388 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC0.7□□□□□ -2.3
COL7A1Q02388 AL161722.3-201ENST00000605789 2983 ntBASIC0.7□□□□□ -2.3
COL7A1Q02388 MTND4P34-201ENST00000572715 1371 ntBASIC0.7□□□□□ -2.3
COL7A1Q02388 SNORA9.1-201ENST00000362412 131 ntBASIC0.7□□□□□ -2.3
COL7A1Q02388 RNU6-234P-201ENST00000365229 104 ntBASIC0.7□□□□□ -2.3
COL7A1Q02388 AC019070.1-201ENST00000415008 1024 ntBASIC0.7□□□□□ -2.3
COL7A1Q02388 OR51A5P-201ENST00000415429 942 ntBASIC0.7□□□□□ -2.3
COL7A1Q02388 RPL31P63-201ENST00000422565 375 ntBASIC0.7□□□□□ -2.3
COL7A1Q02388 LSM1P1-201ENST00000438629 273 ntBASIC0.7□□□□□ -2.3
COL7A1Q02388 ARF4P4-201ENST00000439608 520 ntBASIC0.7□□□□□ -2.3
COL7A1Q02388 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC0.7□□□□□ -2.3
COL7A1Q02388 SNORD59.2-201ENST00000516873 68 ntBASIC0.7□□□□□ -2.3
COL7A1Q02388 AF279873.1-201ENST00000523393 313 ntBASIC0.7□□□□□ -2.3
COL7A1Q02388 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC0.7□□□□□ -2.3
COL7A1Q02388 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC0.7□□□□□ -2.3
COL7A1Q02388 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC0.7□□□□□ -2.3
COL7A1Q02388 AC090425.2-201ENST00000608818 501 ntBASIC0.7□□□□□ -2.3
COL7A1Q02388 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
COL7A1Q02388 AL356379.1-201ENST00000414105 126 ntBASIC0.69□□□□□ -2.3
COL7A1Q02388 AL136380.1-201ENST00000447970 162 ntBASIC0.69□□□□□ -2.3
COL7A1Q02388 RNA5SP310-201ENST00000459084 116 ntBASIC0.69□□□□□ -2.3
COL7A1Q02388 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC0.69□□□□□ -2.3
COL7A1Q02388 AC146944.4-201ENST00000602697 718 ntBASIC0.69□□□□□ -2.3
COL7A1Q02388 AC012557.2-201ENST00000605919 418 ntBASIC0.69□□□□□ -2.3
COL7A1Q02388 AC009090.3-201ENST00000616553 565 ntBASIC0.69□□□□□ -2.3
COL7A1Q02388 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC0.69□□□□□ -2.3
COL7A1Q02388 ZNF37BP-203ENST00000452306 1352 ntBASIC0.69□□□□□ -2.3
COL7A1Q02388 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC0.69□□□□□ -2.3
COL7A1Q02388 MIR524-201ENST00000385242 87 ntBASIC0.69□□□□□ -2.3
COL7A1Q02388 AL355497.1-201ENST00000406262 551 ntBASIC0.69□□□□□ -2.3
COL7A1Q02388 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC0.69□□□□□ -2.3
COL7A1Q02388 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC0.69□□□□□ -2.3
COL7A1Q02388 BZW1P2-201ENST00000473537 826 ntBASIC0.69□□□□□ -2.3
COL7A1Q02388 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC0.69□□□□□ -2.3
COL7A1Q02388 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
COL7A1Q02388 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC0.69□□□□□ -2.3
COL7A1Q02388 MIR3122-201ENST00000577243 73 ntBASIC0.69□□□□□ -2.3
COL7A1Q02388 AC211469.2-201ENST00000605461 205 ntBASIC0.69□□□□□ -2.3
COL7A1Q02388 RNA5SP108-201ENST00000605921 117 ntBASIC0.69□□□□□ -2.3
COL7A1Q02388 AC106028.5-201ENST00000610332 395 ntBASIC0.69□□□□□ -2.3
COL7A1Q02388 AC079597.1-201ENST00000624306 508 ntBASIC0.69□□□□□ -2.3
COL7A1Q02388 AC099654.7-201ENST00000635788 2127 ntBASIC0.69□□□□□ -2.3
COL7A1Q02388 AL137003.2-201ENST00000606924 2538 ntBASIC0.69□□□□□ -2.3
COL7A1Q02388 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC0.68□□□□□ -2.3
COL7A1Q02388 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC0.68□□□□□ -2.3
COL7A1Q02388 MIR1285-1-201ENST00000408593 84 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 RFESDP1-201ENST00000422350 461 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 AC073464.3-201ENST00000422564 712 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 MTND5P25-201ENST00000430499 799 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC0.68□□□□□ -2.3
COL7A1Q02388 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC0.68□□□□□ -2.3
COL7A1Q02388 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC0.68□□□□□ -2.3
COL7A1Q02388 AL627224.1-201ENST00000448334 444 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC0.68□□□□□ -2.3
COL7A1Q02388 HMGB3P3-201ENST00000510526 400 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.68□□□□□ -2.3
COL7A1Q02388 AC025918.2-201ENST00000558683 763 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 FAM71BP1-201ENST00000604431 523 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 FAM157A-202ENST00000615155 405 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 AC091304.6-201ENST00000619761 202 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 MIR17-201ENST00000385012 84 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 RPL23AP47-201ENST00000408017 460 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 RNU6-955P-201ENST00000410497 104 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 MIR1468-201ENST00000410600 86 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 Z95118.1-201ENST00000421372 247 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 AC244035.1-201ENST00000430042 390 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 ELOCP10-201ENST00000440624 327 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 RPS27P21-201ENST00000486977 252 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 AC104685.1-201ENST00000502445 371 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC0.68□□□□□ -2.3
COL7A1Q02388 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC0.68□□□□□ -2.3
COL7A1Q02388 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
COL7A1Q02388 MIR4458-201ENST00000578872 75 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
COL7A1Q02388 ELOCP34-201ENST00000604436 327 ntBASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms